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Slfn9 Gene Detail
Summary
  • Symbol
    Slfn9
  • Name
    schlafen 9
  • Synonyms
    9830137M10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2445121
    NCBI Gene: 237886
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:82978390-82991830 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 50.30 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    283 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2445121
protein coding gene Chr11:82978382-82991830 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018837
protein coding gene Chr11:84269365-84288079 (-)
A/J MGP_AJ_G0018805
protein coding gene Chr11:81078694-81098078 (-)
AKR/J MGP_AKRJ_G0018774
protein coding gene Chr11:83470168-83486091 (-)
BALB/cJ MGP_BALBcJ_G0018777
protein coding gene Chr11:81437436-81453236 (-)
C3H/HeJ MGP_C3HHeJ_G0018591
protein coding gene Chr11:83493198-83506206 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019229
protein coding gene Chr11:86793831-86821206 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016863
protein coding gene Chr11:77991636-78176246 (-)
CAST/EiJ MGP_CASTEiJ_G0018147
protein coding gene Chr11:84185060-84208174 (-)
CBA/J MGP_CBAJ_G0018562
protein coding gene Chr11:90554917-90568424 (-)
DBA/2J MGP_DBA2J_G0018670
protein coding gene Chr11:80608774-80620053 (-)
FVB/NJ MGP_FVBNJ_G0018660
protein coding gene Chr11:80154130-80206434 (-)
LP/J MGP_LPJ_G0018740
protein coding gene Chr11:84781466-84795337 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018686
protein coding gene Chr11:90742117-90756644 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019270
protein coding gene Chr11:83789375-83793309 (-)
PWK/PhJ MGP_PWKPhJ_G0017916
protein coding gene Chr11:81430278-81441515 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017707
protein coding gene Chr11:83352647-83364873 (-)
WSB/EiJ MGP_WSBEiJ_G0018198
protein coding gene Chr11:83609335-83623231 (-)



Homology
more
  • Human Ortholog
    SLFN13, schlafen family member 13
  • Vertebrate Orthologs
    6
  • Human Ortholog
    SLFN13, schlafen family member 13
    Orthology source: HomoloGene
  • Synonyms
    hSLFN13, SLFN10
  • Links
    NCBI Gene ID: 146857
    neXtProt AC: NX_Q68D06
    UniProt: Q68D06

  • Chr Location
    17q12; chr17:35435096-35448837 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    1
  • Gene trapped
    4
  • Targeted
    4
  • Genomic Mutations
    2 involving Slfn9
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000069793 Ensembl Gene Model | MGI Sequence Detail 13441 C57BL/6J ±  kb
transcript ENSMUST00000092840 Ensembl | MGI Sequence Detail 3862 Not Applicable  
polypeptide ENSMUSP00000090515 Ensembl | MGI Sequence Detail 910 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 4
References
more
  • Summaries
    All 34
    Gene Ontology 6
    Phenotypes 14
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory