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Ccdc85a Gene Detail
Summary
  • Symbol
    Ccdc85a
  • Name
    coiled-coil domain containing 85A
  • Synonyms
    E030025D05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2445069
    NCBI Gene: 216613
Location & Maps
more
  • Sequence Map
    Chr11:28385685-28584324 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      198640 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 16.22 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    CCDC85A, coiled-coil domain containing 85A
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CCDC85A, coiled-coil domain containing 85A
    Orthology source: HomoloGene
  • Links
    NCBI Gene ID: 114800
    neXtProt AC: NX_Q96PX6

  • Chr Location
    2p16.1; chr2:56184123-56386174 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Targeted
    2
  • Genomic Mutations
    1 involving Ccdc85a
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005313 VEGA Gene Model | MGI Sequence Detail 198640 C57BL/6J ±  kb
transcript OTTMUST00000011838 VEGA | MGI Sequence Detail 3798 Not Applicable  
polypeptide OTTMUSP00000047620 VEGA | MGI Sequence Detail 545 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    1895 from dbSNP Build 142
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000030509 coiled-coil domain-containing protein 85A
  • InterPro Domains
    IPR019359 CCDC85 family
Molecular
Reagents
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  • All nucleic 14
    Genomic 1
    cDNA 13

    Microarray probesets 4
References
more
  • Summaries
    All 19
    Developmental Gene Expression 1
    Phenotypes 5
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory