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Pcnx2 Gene Detail
Summary
  • Symbol
    Pcnx2
  • Name
    pecanex homolog 2
  • Synonyms
    E330039K12Rik, Pcnxl2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2445010
    NCBI Gene: 270109
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:126478247-126625056 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 73.65 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    768 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2445010
 protein coding gene Chr8:126478243-126625056 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034289
 protein coding gene Chr8:129537281-129690231 (-)
A/J MGP_AJ_G0034269
 protein coding gene Chr8:124165155-124310752 (-)
AKR/J MGP_AKRJ_G0034196
 protein coding gene Chr8:127724497-127874925 (-)
BALB/cJ MGP_BALBcJ_G0034262
 protein coding gene Chr8:124328447-124474315 (-)
C3H/HeJ MGP_C3HHeJ_G0033973
 protein coding gene Chr8:128381967-128530700 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034782
 protein coding gene Chr8:133846914-134000929 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031723
 protein coding gene Chr8:116894294-117040242 (-)
CAST/EiJ MGP_CASTEiJ_G0033300
 protein coding gene Chr8:128514360-128676792 (-)
CBA/J MGP_CBAJ_G0033946
 protein coding gene Chr8:138765710-138932648 (-)
DBA/2J MGP_DBA2J_G0034102
 protein coding gene Chr8:123307783-123453453 (-)
FVB/NJ MGP_FVBNJ_G0034046
 protein coding gene Chr8:122499990-122650695 (-)
LP/J MGP_LPJ_G0034191
 protein coding gene Chr8:129686364-129836957 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034093
 protein coding gene Chr8:140774649-140927654 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034801
 protein coding gene Chr8:127971865-128119131 (-)
PWK/PhJ MGP_PWKPhJ_G0033001
 protein coding gene Chr8:123026764-123215424 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032840
 protein coding gene Chr8:126551078-126743699 (-)
WSB/EiJ MGP_WSBEiJ_G0033417
 protein coding gene Chr8:128696733-128849288 (-)



Homology
more
  • Human Ortholog
    PCNX2, pecanex 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PCNX2, pecanex 2
  • Synonyms
    PCNXL2
  • Links
    NCBI Gene ID: 80003
    neXtProt AC: NX_A6NKB5
    UniProt: A6NKB5

  • Chr Location
    1q42.2; chr1:232983435-233327329 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    2 phenotypes from multigenic genotypes
    3 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    20
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000060212 Ensembl Gene Model | MGI Sequence Detail 146810 C57BL/6J ±  kb
    transcript ENSMUST00000047239 Ensembl | MGI Sequence Detail 7236 Not Applicable  
    polypeptide ENSMUSP00000042294 Ensembl | MGI Sequence Detail 2122 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 20
      cDNA 20

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2142724
    References
    more
    • Summaries
      All 22
      Gene Ontology 1
      Phenotypes 3
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:228536 Frankel WN, et al., Unraveling genetic modifiers in the gria4 mouse model of absence epilepsy. PLoS Genet. 2014 Jul;10(7):e1004454
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory