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Pcnx2 Gene Detail
Summary
  • Symbol
    Pcnx2
  • Name
    pecanex homolog 2
  • Synonyms
    E330039K12Rik, Pcnxl2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2445010
    NCBI Gene: 270109
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:125751508-125898317 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 73.65 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    768 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2445010
protein coding gene Chr8:125751504-125898317 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034289
protein coding gene Chr8:129537281-129690231 (-)
A/J MGP_AJ_G0034269
protein coding gene Chr8:124165155-124310752 (-)
AKR/J MGP_AKRJ_G0034196
protein coding gene Chr8:127724497-127874925 (-)
BALB/cJ MGP_BALBcJ_G0034262
protein coding gene Chr8:124328447-124474315 (-)
C3H/HeJ MGP_C3HHeJ_G0033973
protein coding gene Chr8:128381967-128530700 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034782
protein coding gene Chr8:133846914-134000929 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031723
protein coding gene Chr8:116894294-117040242 (-)
CAST/EiJ MGP_CASTEiJ_G0033300
protein coding gene Chr8:128514360-128676792 (-)
CBA/J MGP_CBAJ_G0033946
protein coding gene Chr8:138765710-138932648 (-)
DBA/2J MGP_DBA2J_G0034102
protein coding gene Chr8:123307783-123453453 (-)
FVB/NJ MGP_FVBNJ_G0034046
protein coding gene Chr8:122499990-122650695 (-)
LP/J MGP_LPJ_G0034191
protein coding gene Chr8:129686364-129836957 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034093
protein coding gene Chr8:140774649-140927654 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034801
protein coding gene Chr8:127971865-128119131 (-)
PWK/PhJ MGP_PWKPhJ_G0033001
protein coding gene Chr8:123026764-123215424 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032840
protein coding gene Chr8:126551078-126743699 (-)
WSB/EiJ MGP_WSBEiJ_G0033417
protein coding gene Chr8:128696733-128849288 (-)



Homology
more
  • Human Ortholog
    PCNX2, pecanex 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PCNX2, pecanex 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PCNXL2
  • Links
    NCBI Gene ID: 80003
    neXtProt AC: NX_A6NKB5
    UniProt: A6NKB5

  • Chr Location
    1q42.2; chr1:232984109-233295735 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 8987
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PCNX2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    2 phenotypes from multigenic genotypes
    3 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000060212 Ensembl Gene Model | MGI Sequence Detail 146810 C57BL/6J ±  kb
transcript ENSMUST00000047239 Ensembl | MGI Sequence Detail 7236 Not Applicable  
polypeptide ENSMUSP00000042294 Ensembl | MGI Sequence Detail 2122 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 20
    cDNA 20

    Microarray probesets 4
Other
Accession IDs
less
MGI:2142724
References
more
  • Summaries
    All 23
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:228536 Frankel WN, et al., Unraveling genetic modifiers in the gria4 mouse model of absence epilepsy. PLoS Genet. 2014 Jul;10(7):e1004454

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/11/2019
MGI 6.14
The Jackson Laboratory