Rsbn1 MGI Mouse Gene Detail - MGI:2444993 - rosbin, round spermatid basic protein 1

Symbol

Rsbn1
Name

rosbin, round spermatid basic protein 1
Synonyms

C230004D03Rik, mKIAA3002, Rsbp

Feature Type

protein coding gene
IDs

MGI:2444993
NCBI Gene: 229675
Alliance

genome feature page
Transcription Start Sites

7 TSS

Sequence Map

Chr3:103821436-103873952 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 3, 45.52 cM
Mapping Data

1 experiment

SNPs within 2kb

161 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444993	protein coding gene	Chr3:103821412-103873952 (+)
129S1/SvImJ	ENSMUSG00200040285	protein coding gene	Chr3:100430097-100482977 (+)
A/J	ENSMUSG00195046183	protein coding gene	Chr3:100843695-100896577 (+)
AKR/J	ENSMUSG00220036862	protein coding gene	Chr3:99203651-99256588 (+)
BALB/cJ	ENSMUSG00180034455	protein coding gene	Chr3:100771470-100824120 (+)
C3H/HeJ	ENSMUSG00175025169	protein coding gene	Chr3:100326016-100378893 (+)
C57BL/6NJ	ENSMUSG00215017521	protein coding gene	Chr3:101091345-101143858 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025459	protein coding gene	Chr3:97985673-98040188 (+)
CAST/EiJ	ENSTCUG00005018882	protein coding gene	Chr3:101050523-101102988 (+)
CBA/J	ENSMUSG00210050673	protein coding gene	Chr3:100948057-101000925 (+)
DBA/2J	ENSMUSG00185021554	protein coding gene	Chr3:101427528-101480036 (+)
FVB/NJ	ENSMUSG00205024757	protein coding gene	Chr3:100008717-100061632 (+)
JF1/MsJ	ENSUMUG00000032497	protein coding gene	Chr3:100180604-100232899 (+)
LP/J	ENSMUSG00230015376	protein coding gene	Chr3:103358419-103411304 (+)
NOD/ShiLtJ	ENSMUSG00190044111	protein coding gene	Chr3:101623478-101676116 (+)
NZO/HlLtJ	ENSMUSG00225018570	protein coding gene	Chr3:105825214-105877877 (+)
PWK/PhJ	ENSLUMG00010027145	protein coding gene	Chr3:100240976-100293577 (+)
SPRET/EiJ	ENSMSPG00010039925	protein coding gene	Chr3:100457953-100510269 (+)
WSB/EiJ	ENSIUOG00005030290	protein coding gene	Chr3:100969468-101021671 (+)

Human Ortholog

RSBN1, round spermatid basic protein 1

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

RSBN1, round spermatid basic protein 1
Synonyms

KDM9, ROSBIN
Links

HGNC:25642

NCBI Gene ID: 54665

UniProt: Q5VWQ0
Chr Location

1p13.2; chr1:113761832-113812476 (-) GRCh38

MGI Vertebrate Homology

Rsbn1 stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: RSBN1
Gene Tree

Rsbn1

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References

1 with disease annotations

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Phenotype Summary

7 phenotypes from 1 allele in 1 genetic background
17 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

14
Chemically induced (other)

1
Endonuclease-mediated

2
Gene trapped

4
Radiation induced

1
Targeted

6
Genomic Mutations

2 involving Rsbn1
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

45 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

12
GO References

8

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

601
Tissues

4
cDNA Data

10
Literature Summary

1

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase rsbn1

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All Sequences

59
RefSeq

11
UniProt

3
CCDS

CCDS17697.1

Ensembl

ENSMUSG00000044098 (Evidence)
NCBI Gene

229675

			Length	Strain/Species	Flank
genomic	ENSMUSG00000044098	Ensembl Gene Model \| MGI Sequence Detail	52517	C57BL/6J	± kb
transcript	ENSMUST00000051139	Ensembl \| MGI Sequence Detail	4762	Not Applicable
polypeptide	ENSMUSP00000058934	Ensembl \| MGI Sequence Detail	795	Not Applicable

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UniProt

3 Sequences
Protein Ontology

PR:000014319 lysine-specific demethylase 9

(term hierarchy)
EC

1.14.11.-
InterPro Domains

IPR039775 Homeodomain containing protein PHTF1/2

IPR026306 RSBN1/Dpy-21/CEP530
GlyGen

Q80T69 1 site

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All nucleic 10

cDNA 10

Microarray probesets 6

Summaries

All 44

Developmental Gene Expression 1

Diseases 1

Gene Ontology 8

Phenotypes 17
Earliest

J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Rsbn1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31033	Chr3:103821415-103821434 (+)	-11 bp
Tssr993	Chr3:103821558-103821560 (+)	123 bp
Tssr31034	Chr3:103821687-103821721 (+)	268 bp
Tssr31035	Chr3:103821728-103821746 (+)	301 bp
Tssr31036	Chr3:103821876-103821921 (+)	463 bp
Tssr31037	Chr3:103821929-103821940 (+)	499 bp
Tssr31038	Chr3:103826942-103826946 (+)	5,508 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/15/2026 MGI 6.29