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Taf6l Gene Detail
Summary
  • Symbol
    Taf6l
  • Name
    TATA-box binding protein associated factor 6 like
  • Synonyms
    2810417N14Rik, C530024J06Rik, PAF65A
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444957
    NCBI Gene: 225895
  • Gene Overview
    MyGene.info: TAF6L
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:8774354-8786417 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 5.56 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    34 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444957
protein coding gene Chr19:8772522-8786417 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024808
protein coding gene Chr19:6048945-6066943 (-)
A/J MGP_AJ_G0024776
protein coding gene Chr19:5724520-5738907 (-)
AKR/J MGP_AKRJ_G0024751
protein coding gene Chr19:5812684-5828213 (-)
BALB/cJ MGP_BALBcJ_G0024776
protein coding gene Chr19:5829254-5843596 (-)
C3H/HeJ MGP_C3HHeJ_G0024542
protein coding gene Chr19:5893679-5907380 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025223
protein coding gene Chr19:6170200-6185766 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022652
protein coding gene Chr19:5969133-5984343 (-)
CAST/EiJ MGP_CASTEiJ_G0024015
protein coding gene Chr19:5545018-5560086 (-)
CBA/J MGP_CBAJ_G0024516
protein coding gene Chr19:6288685-6302352 (-)
DBA/2J MGP_DBA2J_G0024643
protein coding gene Chr19:5556065-5569947 (-)
FVB/NJ MGP_FVBNJ_G0024610
protein coding gene Chr19:5630195-5643844 (-)
LP/J MGP_LPJ_G0024730
protein coding gene Chr19:5937519-5951697 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024637
protein coding gene Chr19:6153264-6170893 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025272
protein coding gene Chr19:5857645-5872269 (-)
PWK/PhJ MGP_PWKPhJ_G0023760
protein coding gene Chr19:5224492-5238443 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023565
protein coding gene Chr19:5458605-5475575 (-)
WSB/EiJ MGP_WSBEiJ_G0024077
protein coding gene Chr19:5825358-5841504 (-)



Homology
more
  • Human Ortholog
    TAF6L, TATA-box binding protein associated factor 6 like
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TAF6L, TATA-box binding protein associated factor 6 like
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PAF65A
  • Links
    NCBI Gene ID: 10629
    neXtProt AC: NX_Q9Y6J9
    UniProt: Q9Y6J9

  • Chr Location
    11q12.3; chr11:62771303-62787342 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 4728
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TAF6L
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 225895 NCBI Gene Model | MGI Sequence Detail 12064 C57BL/6J ±  kb
transcript NM_001177798 RefSeq | MGI Sequence Detail 2366 C57BL/6  
polypeptide NP_666204 RefSeq | MGI Sequence Detail 623 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 4
Other
Accession IDs
less
MGI:1922868, MGI:3035057
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:245730 Bardot P, et al., The TAF10-containing TFIID and SAGA transcriptional complexes are dispensable for early somitogenesis in the mouse embryo. Development. 2017 Oct 15;144(20):3808-3818

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory