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Ckap4 Gene Detail
Summary
  • Symbol
    Ckap4
  • Name
    cytoskeleton-associated protein 4
  • Synonyms
    5630400A09Rik, CLIMP-63, P63
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444926
    NCBI Gene: 216197
  • Gene Overview
    MyGene.info: CKAP4
Location & Maps
more
  • Sequence Map
    Chr10:84526305-84533888 bp, - strand
  • From NCBI annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      7584 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 41.52 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    CKAP4, cytoskeleton associated protein 4
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CKAP4, cytoskeleton associated protein 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CLIMP-63, ERGIC-63, p63
  • Links
    NCBI Gene ID: 10970
    neXtProt AC: NX_Q07065

  • Chr Location
    12q23.3; chr12:106237881-106247935 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 4970
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CKAP4
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Gene trapped
    2
  • Targeted
    2
  • Genomic Mutations
    1 involving Ckap4
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 216197 NCBI Gene Model | MGI Sequence Detail 7584 C57BL/6J ±  kb
transcript NM_175451 RefSeq | MGI Sequence Detail 2915 C57BL/6  
polypeptide Q8BMK4 UniProt | EBI | MGI Sequence Detail 575 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    62 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 126
    cDNA 126

    Microarray probesets 10
References
more
  • Summaries
    All 29
    Gene Ontology 4
    Phenotypes 11
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/22/2016
MGI 6.06
The Jackson Laboratory