5031439G07Rik Gene Detail

Summary

• Symbol
  5031439G07Rik
• Name
  RIKEN cDNA 5031439G07 gene

• Feature Type
  protein coding gene
• IDs
  MGI:2444899
  NCBI Gene: 223739
• Gene Overview
  MyGene.info: KIAA0930

Location & Maps

• Sequence Map
  Chr15:84943936-84988551 bp, - strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    44616 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 40.25 cM
• Mapping Data
  2 experiments

Homology

• Human Ortholog
  KIAA0930, KIAA0930

• Vertebrate Orthologs
  9

• Human Ortholog
  KIAA0930, KIAA0930
  Orthology source: HomoloGene, HGNC
• Synonyms
  C22orf9, LSC3
• Links
  HGNC:1314

  NCBI Gene ID: 23313

  neXtProt AC: NX_Q6ICG6

  
  
• Chr Location
  22q13.31; chr22:45192242-45240769 (-)  GRCh38.p2

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• HomoloGene
  Vertebrate Homology Class 15140
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  
• HCOP
  human homology predictions: KIAA0930
• Gene Tree
  5031439G07Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  21 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Radiation induced
  2
• Targeted
  2
• Genomic Mutations
  3 involving 5031439G07Rik
• Incidental Mutations
  Mutagenetix , APF , CvDC

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• Assay Results
  47
• Tissues
  13
• cDNA Data
  13
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO

Interactions

• 5031439G07Rik interacts with 428 markers (Mir1b, Mir7-1, Mir7-2, ...) View All

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS27715.1

• VEGA
  OTTMUSG00000028166 (Evidence)
• Ensembl
  ENSMUSG00000036046 (Evidence)
• NCBI Gene
  223739

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000028166	VEGA Gene Model | MGI Sequence Detail	44616	C57BL/6J
transcript	OTTMUST00000069763	VEGA | MGI Sequence Detail	6845	Not Applicable
polypeptide	OTTMUSP00000035483	VEGA | MGI Sequence Detail	404	Not Applicable

Polymorphisms

• SNPs within 2kb
  324 from dbSNP Build 142

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR019141 Protein of unknown function DUF2045

Molecular
Reagents

• All nucleic 14

  Genomic 1

  cDNA 13

  
  

  Microarray probesets 6

Other
Accession IDs

MGI:2146237

References

• Summaries
  All 20

  Developmental Gene Expression 2

  Diseases 1

  Phenotypes 21
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42