About   Help   FAQ
Cped1 Gene Detail
Summary
  • Symbol
    Cped1
  • Name
    cadherin-like and PC-esterase domain containing 1
  • Synonyms
    A430107O13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444814
    NCBI Gene: 214642
  • Gene Overview
    MyGene.info: CPED1
  • Alliance
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:21985916-22256404 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 8.86 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2098 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444814
protein coding gene Chr6:21985702-22256407 (.)
129S1/SvImJ MGP_129S1SvImJ_G0030482
protein coding gene Chr6:19457746-19757545 (+)
A/J MGP_AJ_G0030455
protein coding gene Chr6:18671093-18940117 (+)
AKR/J MGP_AKRJ_G0030382
protein coding gene Chr6:19258627-19542690 (+)
BALB/cJ MGP_BALBcJ_G0030464
protein coding gene Chr6:18745078-19016381 (+)
C3H/HeJ MGP_C3HHeJ_G0030178
protein coding gene Chr6:19209808-19491298 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030919
protein coding gene Chr6:20049643-20354252 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028130
protein coding gene Chr6:17286221-17542264 (+)
CAST/EiJ MGP_CASTEiJ_G0029580
protein coding gene Chr6:19129186-19415891 (+)
CBA/J MGP_CBAJ_G0030156
protein coding gene Chr6:20715351-21033562 (+)
DBA/2J MGP_DBA2J_G0030300
protein coding gene Chr6:18570419-18844171 (+)
FVB/NJ MGP_FVBNJ_G0030254
protein coding gene Chr6:18373413-18638426 (+)
LP/J MGP_LPJ_G0030387
protein coding gene Chr6:19560302-19865763 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030290
protein coding gene Chr6:22555980-22863866 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030949
protein coding gene Chr6:19206446-19501025 (+)
PWK/PhJ MGP_PWKPhJ_G0029294
protein coding gene Chr6:18251572-18522661 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029130
protein coding gene Chr6:18960633-19239480 (+)
WSB/EiJ MGP_WSBEiJ_G0029656
protein coding gene Chr6:19092357-19389046 (+)



Homology
more
  • Human Ortholog
    CPED1, cadherin like and PC-esterase domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CPED1, cadherin like and PC-esterase domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C7orf58
  • Links
    NCBI Gene ID: 79974
    neXtProt AC: NX_A4D0V7
    UniProt: A4D0V7

  • Chr Location
    7q31.31; chr7:120988697-121297444 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 57014
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CPED1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000062980 Ensembl Gene Model | MGI Sequence Detail 270489 C57BL/6J ±  kb
transcript ENSMUST00000115383 Ensembl | MGI Sequence Detail 5690 Not Applicable  
polypeptide ENSMUSP00000111041 Ensembl | MGI Sequence Detail 1026 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    8 Sequences
  • InterPro Domains
    IPR025883 Cadherin-like beta sandwich domain
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 6
Other
Accession IDs
less
MGI:2141445
References
more
  • Summaries
    All 23
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory