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Ncaph
Gene Detail
Symbol

Name
ID
Ncaph
non-SMC condensin I complex, subunit H
MGI:2444777
Synonyms
A730011O11Rik, Brrn1, HCAP-H, mKIAA0074
Feature Type
protein coding gene
Genetic Map
Chromosome 2
61.76 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr2:127103809-127133954 bp, - strand
From VEGA annotation of GRCm38

  30146 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:133986  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: NCAPH
Protein SuperFamily: chromosome condensation complex condensin, subunit H
Gene Tree: Ncaph

Human
homologs
NCAPH, non-SMC condensin I complex, subunit H
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 23397
neXtProt AC: NX_Q15003

Human Synonyms: BRRN1, CAP-H

Human Chr (Location): 2q11.2; chr2:96335741-96377095 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(19) : Gene trapped(16) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ncaph interacts with 258 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process cell cycle, cell division, ...
Component chromosome, condensin complex, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (48)    Tissues (11)    Images (29)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 48
cDNA source data(109)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase ncaph ; ZFIN ncaph    NEW 
Molecular
reagents
All nucleic(110) cDNA(110)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000016017 (Evidence)
Ensembl Gene Model ENSMUSG00000034906 (Evidence)
Entrez Gene 215387 (Evidence)
UniGene 29786
DFCI TC1572429, TC1624646, TC1722643
DoTS DT.101288907, DT.101736162, DT.94347135
NIA Mouse Gene Index U023312
Consensus CDS Project CCDS16693.2
International Mouse Phenotyping Consortium Status Ncaph
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016017 VEGA Gene Model | MGI Sequence Detail 30146 C57BL/6J ±  kb
transcript OTTMUST00000038170 VEGA | MGI Sequence Detail 2695 Not Applicable 
polypeptide OTTMUSP00000017117 VEGA | MGI Sequence Detail 731 Not Applicable 

For the selected sequences
All sequences(48) RefSeq(2) UniProt(3)
Polymorphisms
SNPs within 2kb(258 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR022816 Condensin complex subunit 2/barren
Protein Ontology PR:000011024 condensin complex subunit 2
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:222181 Nishide K, et al., Overlapping and non-overlapping functions of condensins I and II in neural stem cell divisions. PLoS Genet. 2014 Dec;10(12):e1004847
All references(36)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory