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Galnt12
Gene Detail
Symbol

Name
ID
Galnt12
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12
MGI:2444664
Synonyms
A630062B03Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 4
25.96 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr4:47091909-47123070 bp, + strand
From VEGA annotation of GRCm38

  31162 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11637  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: GALNT12
Gene Tree: Galnt12

Human
homologs
GALNT12, polypeptide N-acetylgalactosaminyltransferase 12
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 79695
neXtProt AC: NX_Q8IXK2

Human Synonyms: CRCS1, GalNAc-T12

Human Chr (Location): 9q22.33; chr9:98807699-98850081 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human GALNT12

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Galnt12 interacts with 119 markers (Mir16-1, Mir19a, Mir20a, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (124)    Tissues (105)    Images (17)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 124
cDNA source data(19)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase galnt12    NEW 
Molecular
reagents
All nucleic(19) cDNA(19)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000006777 (Evidence)
Ensembl Gene Model ENSMUSG00000039774 (Evidence)
Entrez Gene 230145 (Evidence)
UniGene 132246
DFCI TC1583017, TC1598396
DoTS DT.101150402, DT.528118, DT.94288093
NIA Mouse Gene Index U004296
EC 2.4.1.-, 2.4.1.41
Consensus CDS Project CCDS18158.1
International Mouse Phenotyping Consortium Status Galnt12
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000006777 VEGA Gene Model | MGI Sequence Detail 31162 C57BL/6J ±  kb
transcript OTTMUST00000015587 VEGA | MGI Sequence Detail 2288 Not Applicable 
polypeptide OTTMUSP00000007178 VEGA | MGI Sequence Detail 576 Not Applicable 

For the selected sequences
All sequences(33) RefSeq(3) UniProt(3)
Polymorphisms
SNPs within 2kb(186 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR027791 Galactosyltransferase, C-terminal
InterPro IPR001173 Glycosyltransferase 2-like
InterPro IPR029044 Nucleotide-diphospho-sugar transferases
InterPro IPR000772 Ricin B, lectin domain
Protein Ontology PR:000007821 polypeptide N-acetylgalactosaminyltransferase 12
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(29)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory