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Galnt12
Gene Detail
 Symbol
Name
ID
Galnt12
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12
MGI:2444664
Synonyms A630062B03Rik
Feature Type protein coding gene
Genetic Map
Chromosome 4
25.96 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr4:47091909-47123070 bp, + strand
From VEGA annotation of GRCm38

  31162 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11637  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Galnt12

Human
homologs
Human Homolog GALNT12, polypeptide N-acetylgalactosaminyltransferase 12
NCBI Gene ID 79695
neXtProt AC  NX_Q8IXK2
Human Synonyms  CRCS1, GalNAc-T12
Human Chr (Location)  9q22.33; chr9:98807699-98850081 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human GALNT12
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Galnt12 interacts with 119 markers (Mir16-1, Mir19a, Mir20a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process biological_process
Component Golgi apparatus, integral component of membrane, ...
Function metal ion binding, polypeptide N-acetylgalactosaminyltransferase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (124)    Tissues (105)    Images (17)
Theiler Stages: 12, 22, 23
Assay TypeResults
RNA in situ 124
cDNA source data(19)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(19) cDNA(19)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000006777 (Evidence)
Ensembl Gene ModelENSMUSG00000039774 (Evidence)
Entrez Gene230145 (Evidence)
UniGene132246
DFCITC1583017, TC1598396
DoTSDT.101150402, DT.528118, DT.94288093
NIA Mouse Gene IndexU004296
EC2.4.1.41
Consensus CDS ProjectCCDS18158.1
International Mouse Knockout Project StatusGalnt12
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000006777 VEGA Gene Model | MGI Sequence Detail 31162 C57BL/6J ±  kb
transcript OTTMUST00000015587 VEGA | MGI Sequence Detail 2288 Not Applicable 
polypeptide OTTMUSP00000007178 VEGA | MGI Sequence Detail 576 Not Applicable 

For the selected sequences
All sequences(32) RefSeq(2) UniProt(3)
Polymorphisms SNPs within 2kb(186 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001173 Glycosyl transferase, family 2
InterPro IPR000772 Ricin B lectin domain
Protein Ontology PR:000007821 polypeptide N-acetylgalactosaminyltransferase 12
References (Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(30)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/23/2014
MGI 5.19
The Jackson Laboratory