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Ranbp3l Gene Detail
Summary
  • Symbol
    Ranbp3l
  • Name
    RAN binding protein 3-like
  • Synonyms
    C130037N17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444654
    NCBI Gene: 223332
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:8967949-9067335 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 3.82 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    271 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444654
protein coding gene Chr15:8967949-9067335 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021709
protein coding gene Chr15:6080634-6145682 (+)
A/J MGP_AJ_G0021669
protein coding gene Chr15:5917193-5979179 (+)
AKR/J MGP_AKRJ_G0021647
protein coding gene Chr15:5979263-6041642 (+)
BALB/cJ MGP_BALBcJ_G0021676
protein coding gene Chr15:5832024-5890548 (+)
C3H/HeJ MGP_C3HHeJ_G0021452
protein coding gene Chr15:6030016-6091631 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022115
protein coding gene Chr15:6282150-6355164 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019652
protein coding gene Chr15:5492478-5547856 (+)
CAST/EiJ MGP_CASTEiJ_G0020968
protein coding gene Chr15:6026149-6093966 (+)
CBA/J MGP_CBAJ_G0021421
protein coding gene Chr15:6439107-6502784 (+)
DBA/2J MGP_DBA2J_G0021545
protein coding gene Chr15:5801685-5864490 (+)
FVB/NJ MGP_FVBNJ_G0021523
protein coding gene Chr15:5732858-5787263 (+)
LP/J MGP_LPJ_G0021613
protein coding gene Chr15:5998165-6068225 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021548
protein coding gene Chr15:6678722-6744471 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022138
protein coding gene Chr15:6026196-6099721 (+)
PWK/PhJ MGP_PWKPhJ_G0020711
protein coding gene Chr15:5852189-5915152 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020549
protein coding gene Chr15:5909677-5970627 (+)
WSB/EiJ MGP_WSBEiJ_G0021024
protein coding gene Chr15:5970636-6031542 (+)



Homology
more
  • Human Ortholog
    RANBP3L, RAN binding protein 3 like
  • Vertebrate Orthologs
    9
  • Human Ortholog
    RANBP3L, RAN binding protein 3 like
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 202151
    neXtProt AC: NX_Q86VV4
    UniProt: Q86VV4

  • Chr Location
    5p13.2; chr5:36246919-36301936 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 223332 NCBI Gene Model | MGI Sequence Detail 99387 C57BL/6J ±  kb
transcript NM_198024 RefSeq | MGI Sequence Detail 4298 C57BL/6  
polypeptide Q6PDH4 UniProt | EBI | MGI Sequence Detail 491 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 3
References
more
  • Summaries
    All 17
    Gene Ontology 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:240376 Chen F, et al., Nuclear Export of Smads by RanBP3L Regulates Bone Morphogenetic Protein Signaling and Mesenchymal Stem Cell Differentiation. Mol Cell Biol. 2015 May;35(10):1700-11

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/11/2019
MGI 6.14
The Jackson Laboratory