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Vstm4 Gene Detail
Summary
  • Symbol
    Vstm4
  • Name
    V-set and transmembrane domain containing 4
  • Synonyms
    E130203B14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444633
    NCBI Gene: 320736
Location & Maps
more
  • Sequence Map
    Chr14:32856756-32939487 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      82732 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 19.40 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    VSTM4, V-set and transmembrane domain containing 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    VSTM4, V-set and transmembrane domain containing 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C10orf72
  • Links
    NCBI Gene ID: 196740
    neXtProt AC: NX_Q8IW00

  • Chr Location
    10q11.23; chr10:49014245-49129144 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 18707
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: VSTM4
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
  • All Mutations and Alleles
    1
  • Targeted
    1
  • Incidental Mutations
    APF
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015245 VEGA Gene Model | MGI Sequence Detail 82732 C57BL/6J ±  kb
transcript OTTMUST00000036106 VEGA | MGI Sequence Detail 2741 Not Applicable  
polypeptide OTTMUSP00000016223 VEGA | MGI Sequence Detail 319 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    477 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 2
References
more
  • Summaries
    All 21
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:229257 Gu Z, et al., Expression of the immunoglobulin superfamily cell adhesion molecules in the developing spinal cord and dorsal root ganglion. PLoS One. 2015;10(3):e0121550

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/22/2016
MGI 6.06
The Jackson Laboratory