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Sgtb Gene Detail
Summary
  • Symbol
    Sgtb
  • Name
    small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
  • Synonyms
    C630001O05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444615
    NCBI Gene: 218544
Location & Maps
more
  • Sequence Map
    Chr13:104109741-104141735 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      31995 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 56.23 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    SGTB, small glutamine rich tetratricopeptide repeat containing beta
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SGTB, small glutamine rich tetratricopeptide repeat containing beta
    Orthology source: HGNC, HomoloGene
  • Synonyms
    SGT2
  • Links
    NCBI Gene ID: 54557
    neXtProt AC: NX_Q96EQ0

  • Chr Location
    5q12.3; chr5:65665928-65722821 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    7
  • Gene trapped
    4
  • Targeted
    3
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035056 VEGA Gene Model | MGI Sequence Detail 31995 C57BL/6J ±  kb
transcript OTTMUST00000089165 VEGA | MGI Sequence Detail 3048 Not Applicable  
polypeptide OTTMUSP00000048689 VEGA | MGI Sequence Detail 304 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    443 from dbSNP Build 142
Protein
Information
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  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000014808 small glutamine-rich tetratricopeptide repeat-containing protein beta
  • InterPro Domains
    IPR032374 SGTA, homodimerisation domain
    IPR011990 Tetratricopeptide-like helical domain
    IPR019734 Tetratricopeptide repeat
    IPR001440 Tetratricopeptide repeat 1
    IPR013026 Tetratricopeptide repeat-containing domain
Molecular
Reagents
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  • All nucleic 29
    cDNA 29

    Microarray probesets 3
References
more
  • Summaries
    All 21
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory