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Slc26a9
Gene Detail
Symbol

Name
ID
Slc26a9
solute carrier family 26, member 9
MGI:2444594
Synonyms
anion transporter/exchanger-9, E030002L01Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 1
57.18 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr1:131744022-131771504 bp, + strand
From VEGA annotation of GRCm38

  27483 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:14179  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

HCOP human homology predictions: SLC26A9
Protein SuperFamily: sulfate transport protein
Gene Tree: Slc26a9

Human
homologs
SLC26A9, solute carrier family 26 (anion exchanger), member 9
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 115019
neXtProt AC: NX_Q7LBE3

Human Chr (Location): 1q32.1; chr1:205913048-205943472 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(26) : Gene trapped(25) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a null allele exhibit reduced gastric secretory membranes and loss of gastric acid secretion.
 
Phenotype Images(1)
Interactions
Slc26a9 interacts with 311 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (28 annotations)
Process anion transmembrane transport, anion transport, ...
Component apical plasma membrane, cell surface, ...
Function anion:anion antiporter activity, ATPase binding, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (132)    Tissues (102)    Images (17)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 132
cDNA source data(8)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slc26a9    NEW 
Molecular
reagents
All nucleic(11) cDNA(8) Primer pair(2) Other(1)
Microarray probesets(1)
Other database
links
VEGA Gene Model OTTMUSG00000021566 (Evidence)
Ensembl Gene Model ENSMUSG00000042268 (Evidence)
Entrez Gene 320718 (Evidence)
UniGene 482704
DFCI TC1588035
DoTS DT.94283154
NIA Mouse Gene Index U000784
Consensus CDS Project CCDS15273.1
International Mouse Phenotyping Consortium Status Slc26a9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000021566 VEGA Gene Model | MGI Sequence Detail 27483 C57BL/6J ±  kb
transcript OTTMUST00000051188 VEGA | MGI Sequence Detail 4739 Not Applicable 
polypeptide OTTMUSP00000024036 VEGA | MGI Sequence Detail 790 Not Applicable 

For the selected sequences
All sequences(34) RefSeq(7) UniProt(3)
Polymorphisms
SNPs within 2kb(301 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001902 SLC26A/SulP transporter
InterPro IPR011547 SLC26A/SulP transporter domain
InterPro IPR030306 Solute carrier family 26 member 9
InterPro IPR002645 STAS domain
Protein Ontology PR:000015044 solute carrier family 26 member 9
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:215845 Singh AK, et al., Molecular transport machinery involved in orchestrating luminal acid-induced duodenal bicarbonate secretion in vivo. J Physiol. 2013 Nov 1;591(Pt 21):5377-91
All references(31)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory