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Nhlrc3 Gene Detail
Summary
  • Symbol
    Nhlrc3
  • Name
    NHL repeat containing 3
  • Synonyms
    8030451K01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444520
    NCBI Gene: 212114
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:53451996-53463258 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 25.15 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    124 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444520
protein coding gene Chr3:53448583-53463332 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027205
protein coding gene Chr3:52045559-52060355 (-)
A/J MGP_AJ_G0027165
protein coding gene Chr3:50473044-50487791 (-)
AKR/J MGP_AKRJ_G0027134
protein coding gene Chr3:51495375-51510097 (-)
BALB/cJ MGP_BALBcJ_G0027177
protein coding gene Chr3:50338510-50353211 (-)
C3H/HeJ MGP_C3HHeJ_G0026920
protein coding gene Chr3:51724160-51740264 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027623
protein coding gene Chr3:54064295-54079135 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024983
protein coding gene Chr3:47048510-47064098 (-)
CAST/EiJ MGP_CASTEiJ_G0026373
protein coding gene Chr3:51820798-51838661 (-)
CBA/J MGP_CBAJ_G0026897
protein coding gene Chr3:55772528-55787285 (-)
DBA/2J MGP_DBA2J_G0027031
protein coding gene Chr3:50053050-50069322 (-)
FVB/NJ MGP_FVBNJ_G0026999
protein coding gene Chr3:49035737-49050716 (-)
LP/J MGP_LPJ_G0027143
protein coding gene Chr3:52772674-52787387 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027017
protein coding gene Chr3:59888192-59904588 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027682
protein coding gene Chr3:51405700-51421980 (-)
PWK/PhJ MGP_PWKPhJ_G0026105
protein coding gene Chr3:49717122-49732835 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025918
protein coding gene Chr3:51128802-51143424 (-)
WSB/EiJ MGP_WSBEiJ_G0026447
protein coding gene Chr3:51516468-51531986 (-)



Homology
more
  • Human Ortholog
    NHLRC3, NHL repeat containing 3
  • Vertebrate Orthologs
    9
  • Human Ortholog
    NHLRC3, NHL repeat containing 3
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 387921
    neXtProt AC: NX_Q5JS37
    UniProt: Q5JS37

  • Chr Location
    13q13.3; chr13:39038311-39050109 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 212114 NCBI Gene Model | MGI Sequence Detail 11263 C57BL/6J ±  kb
transcript NM_172501 RefSeq | MGI Sequence Detail 1560 C57BL/6  
polypeptide Q8CCH2 UniProt | EBI | MGI Sequence Detail 347 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 51
    Genomic 2
    cDNA 49

    Microarray probesets 4
References
more
  • Summaries
    All 33
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 1
    Phenotypes 12
  • Earliest
    J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/11/2019
MGI 6.14
The Jackson Laboratory