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Rbms3 Gene Detail
Summary
  • Symbol
    Rbms3
  • Name
    RNA binding motif, single stranded interacting protein
  • Synonyms
    6720477E09Rik, 8430436O14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444477
    NCBI Gene: 207181
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:116572746-117629913 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 68.78 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    11429 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444477
protein coding gene Chr9:116572746-118040355 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035401
protein coding gene Chr9:119165164-120285127 (-)
A/J MGP_AJ_G0035381
protein coding gene Chr9:114749583-115830525 (-)
AKR/J MGP_AKRJ_G0035314
protein coding gene Chr9:117705798-118806975 (-)
BALB/cJ MGP_BALBcJ_G0035377
protein coding gene Chr9:114552370-115680738 (-)
C3H/HeJ MGP_C3HHeJ_G0035085
protein coding gene Chr9:118199366-119302318 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035900
protein coding gene Chr9:122396947-123555112 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032783
protein coding gene Chr9:112003435-113061709 (-)
CAST/EiJ MGP_CASTEiJ_G0034390
protein coding gene Chr9:118109913-119232764 (-)
CBA/J MGP_CBAJ_G0035052
protein coding gene Chr9:126976339-128161130 (-)
DBA/2J MGP_DBA2J_G0035211
protein coding gene Chr9:114227225-115286672 (-)
FVB/NJ MGP_FVBNJ_G0035158
protein coding gene Chr9:113056541-114117938 (-)
LP/J MGP_LPJ_G0035290
protein coding gene Chr9:119493669-120619435 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035199
protein coding gene Chr9:128139249-129279710 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035919
protein coding gene Chr9:118075768-119179431 (-)
PWK/PhJ MGP_PWKPhJ_G0034096
protein coding gene Chr9:114572452-115659232 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033930
protein coding gene Chr9:118153005-119276716 (-)
WSB/EiJ MGP_WSBEiJ_G0034510
protein coding gene Chr9:117969378-119104985 (-)



Homology
more
  • Human Ortholog
    RBMS3, RNA binding motif single stranded interacting protein 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RBMS3, RNA binding motif single stranded interacting protein 3
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 27303
    neXtProt AC: NX_Q6XE24
    UniProt: Q6XE24

  • Chr Location
    3p24.1; chr3:29280860-30010395 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039607 Ensembl Gene Model | MGI Sequence Detail 1057168 C57BL/6J ±  kb
transcript ENSMUST00000164018 Ensembl | MGI Sequence Detail 2126 Not Applicable  
polypeptide ENSMUSP00000131371 Ensembl | MGI Sequence Detail 463 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    9 Sequences
  • Protein Ontology
    PR:000013812 RNA-binding motif, single-stranded-interacting protein 3
  • InterPro Domains
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR002343 Paraneoplastic encephalomyelitis antigen
    IPR034406 RBMS3, RNA recognition motif 2
    IPR035979 RNA-binding domain superfamily
    IPR000504 RNA recognition motif domain
Molecular
Reagents
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  • All nucleic 70
    cDNA 67
    Primer pair 2
    Other 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:1918756
References
more
  • Summaries
    All 29
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:199211 Lu CK, et al., Rbms3, an RNA-binding protein, mediates the expression of Ptf1a by binding to its 3'UTR during mouse pancreas development. DNA Cell Biol. 2012 Jul;31(7):1245-51

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory