Rnf214 Gene Detail

Summary

• Symbol
  Rnf214
• Name
  ring finger protein 214
• Synonyms
  D130054N24Rik

• Feature Type
  protein coding gene
• IDs
  MGI:2444451
  NCBI Gene: 235315

Location & Maps

• Sequence Map
  Chr9:45863425-45906894 bp, - strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    43470 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 25.26 cM
• Mapping Data
  1 experiment

Homology

• Human Ortholog
  RNF214, ring finger protein 214

• Vertebrate Orthologs
  10

• Human Ortholog
  RNF214, ring finger protein 214
  Orthology source: HomoloGene, HGNC
• Links
  HGNC:25335

  NCBI Gene ID: 257160

  neXtProt AC: NX_Q8ND24

  UniProt: Q8ND24

  
  
• Chr Location
  11q23.3; chr11:117232625-117285688 (+)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 109357
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  
• HCOP
  human homology predictions: RNF214
• Gene Tree
  Rnf214
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  12
• Gene trapped
  9
• Targeted
  3
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  17 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

• External Resources
  FuncBase

Expression

• cDNA Data
  16

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  Xenbase rnf214

Interactions

• Rnf214 interacts with 418 markers (Mir1a-1, Mir1a-2, Mir1b, ...) View All

Sequences &
Gene Models

• All Sequences
  88
• RefSeq
  24
• UniProt
  5
• CCDS
  CCDS23136.1, CCDS80987.1, CCDS80988.1

• VEGA
  OTTMUSG00000034964 (Evidence)
• Ensembl
  ENSMUSG00000042790 (Evidence)
• NCBI Gene
  235315

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000034964	VEGA Gene Model | MGI Sequence Detail	43470	C57BL/6J
transcript	OTTMUST00000088896	VEGA | MGI Sequence Detail	3782	Not Applicable
polypeptide	OTTMUSP00000048513	VEGA | MGI Sequence Detail	668	Not Applicable

Polymorphisms

• SNPs within 2kb
  273 from dbSNP Build 142

Protein
Information

• UniProt
  5 Sequences
• Protein Ontology
  PR:000014121 RING finger protein 214
  (term hierarchy)
• InterPro Domains
  IPR011990 Tetratricopeptide-like helical domain
  IPR013083 Zinc finger, RING/FYVE/PHD-type
  IPR001841 Zinc finger, RING-type

Molecular
Reagents

• All nucleic 16

  cDNA 16

  
  

  Microarray probesets 6

References

• Summaries
  All 23

  Gene Ontology 1

  Phenotypes 5
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582