A630066F11Rik Gene Detail

Summary

• Symbol
  A630066F11Rik
• Name
  RIKEN cDNA A630066F11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444428
  NCBI Gene: 320642
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:7539135-7540387 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 2.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444428	lncRNA gene	Chr10:7539080-7540395 (+)
129S1/SvImJ	ENSMUSG00200010976	lncRNA gene	Chr10:4533540-4534849 (+)
A/J	ENSMUSG00195010466	lncRNA gene	Chr10:4422297-4423606 (+)
AKR/J	ENSMUSG00220007760	lncRNA gene	Chr10:4540617-4541926 (+)
BALB/cJ	ENSMUSG00180023596	lncRNA gene	Chr10:4584395-4585704 (+)
C3H/HeJ	ENSMUSG00175012865	lncRNA gene	Chr10:4574678-4575987 (+)
C57BL/6NJ	ENSMUSG00215005276	lncRNA gene	Chr10:4477281-4478590 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017962	lncRNA gene	Chr10:4532576-4533885 (+)
CBA/J	ENSMUSG00210012586	lncRNA gene	Chr10:4520458-4521767 (+)
DBA/2J	ENSMUSG00185010430	lncRNA gene	Chr10:4566865-4568174 (+)
FVB/NJ	ENSMUSG00205008621	lncRNA gene	Chr10:4519887-4521196 (+)
JF1/MsJ	ENSUMUG00000039128	lncRNA gene	Chr10:4654629-4655937 (+)
LP/J	ENSMUSG00230017337	lncRNA gene	Chr10:6183339-6184648 (+)
NOD/ShiLtJ	ENSMUSG00190025113	lncRNA gene	Chr10:4511636-4512945 (+)
NZO/HlLtJ	ENSMUSG00225016604	lncRNA gene	Chr10:10704873-10706182 (+)
PWK/PhJ	ENSLUMG00010021008	lncRNA gene	Chr10:4386933-4388242 (+)
SPRET/EiJ	ENSMSPG00010006877	lncRNA gene	Chr10:4745577-4746912 (+)
WSB/EiJ	ENSIUOG00005014249	lncRNA gene	Chr10:4447459-4448768 (+)

Homology

• Gene Tree
  A630066F11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  7

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000120335 (Evidence)
• NCBI Gene
  320642

Representative Sequences			Length	Strain/Species
genomic	320642	NCBI Gene Model | MGI Sequence Detail	1253	C57BL/6J
transcript	NR_030698	RefSeq | MGI Sequence Detail	1253	C57BL/6

Molecular
Reagents

• All nucleic 7

  cDNA 7

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for A630066F11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92304	Chr10:7538559-7538564 (+)	-573 bp
Tssr92305	Chr10:7539132-7539159 (+)	11 bp
Tssr92306	Chr10:7539163-7539181 (+)	37 bp