About   Help   FAQ
Sdk1 Gene Detail
Summary
  • Symbol
    Sdk1
  • Name
    sidekick cell adhesion molecule 1
  • Synonyms
    6720466O15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444413
    NCBI Gene: 330222
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:141241497-142215586 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 79.81 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    3574 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444413
protein coding gene Chr5:141241490-142215586 (.)
129S1/SvImJ MGP_129S1SvImJ_G0030309
protein coding gene Chr5:146397367-147423184 (+)
A/J MGP_AJ_G0030278
protein coding gene Chr5:140140484-141122344 (+)
AKR/J MGP_AKRJ_G0030210
protein coding gene Chr5:144521489-145531393 (+)
BALB/cJ MGP_BALBcJ_G0030295
protein coding gene Chr5:141383755-142349112 (+)
C3H/HeJ MGP_C3HHeJ_G0030006
protein coding gene Chr5:145332007-146344437 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030740
protein coding gene Chr5:151807975-152830209 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027958
protein coding gene Chr5:133964194-134932813 (+)
CAST/EiJ MGP_CASTEiJ_G0029411
protein coding gene Chr5:144765141-145779636 (+)
CBA/J MGP_CBAJ_G0029976
protein coding gene Chr5:157983792-159051765 (+)
DBA/2J MGP_DBA2J_G0030126
protein coding gene Chr5:139937178-140902691 (+)
FVB/NJ MGP_FVBNJ_G0030081
protein coding gene Chr5:139111663-140083169 (+)
LP/J MGP_LPJ_G0030212
protein coding gene Chr5:147010372-148048829 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030112
protein coding gene Chr5:160573734-161602567 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030780
protein coding gene Chr5:144362532-145373882 (+)
PWK/PhJ MGP_PWKPhJ_G0029126
protein coding gene Chr5:138976547-139953325 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028962
protein coding gene Chr5:142069280-143131415 (+)
WSB/EiJ MGP_WSBEiJ_G0029485
protein coding gene Chr5:145149853-146166043 (+)



Homology
more
  • Human Ortholog
    SDK1, sidekick cell adhesion molecule 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SDK1, sidekick cell adhesion molecule 1
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 221935
    neXtProt AC: NX_Q7Z5N4
    UniProt: Q7Z5N4

  • Chr Location
    7p22.2; chr7:3301448-4269000 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 330222 NCBI Gene Model | MGI Sequence Detail 974090 C57BL/6J ±  kb
transcript NM_177879 RefSeq | MGI Sequence Detail 8513 C57BL/6  
polypeptide Q3UH53 UniProt | EBI | MGI Sequence Detail 2193 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 10
    Primer pair 1
    Other 1

    Microarray probesets 3
References
more
  • Summaries
    All 30
    Developmental Gene Expression 4
    Gene Ontology 4
    Phenotypes 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:238021 Goodman KM, et al., Molecular basis of sidekick-mediated cell-cell adhesion and specificity. Elife. 2016 Sep 19;5

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/13/2018
MGI 6.13
The Jackson Laboratory