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Sdk1 Gene Detail
Summary
  • Symbol
    Sdk1
  • Name
    sidekick cell adhesion molecule 1
  • Synonyms
    6720466O15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444413
    NCBI Gene: 330222
Location & Maps
more
  • Sequence Map
    Chr5:141241490-142215586 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      974097 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 79.81 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    SDK1, sidekick cell adhesion molecule 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SDK1, sidekick cell adhesion molecule 1
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 221935
    neXtProt AC: NX_Q7Z5N4

  • Chr Location
    7p22.2; chr7:3301448-4269000 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029307 VEGA Gene Model | MGI Sequence Detail 974097 C57BL/6J ±  kb
transcript OTTMUST00000072624 VEGA | MGI Sequence Detail 10352 Not Applicable  
polypeptide OTTMUSP00000037427 VEGA | MGI Sequence Detail 2193 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    3574 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 9
    Primer pair 1
    Other 1

    Microarray probesets 3
References
more
  • Summaries
    All 26
    Developmental Gene Expression 4
    Gene Ontology 3
    Phenotypes 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:225578 Krishnaswamy A, et al., Sidekick 2 directs formation of a retinal circuit that detects differential motion. Nature. 2015 Aug 27;524(7566):466-70

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/27/2016
MGI 6.05
The Jackson Laboratory