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Cfap46 Gene Detail
Summary
  • Symbol
    Cfap46
  • Name
    cilia and flagella associated protein 46
  • Synonyms
    9330101J02Rik, E030019B06Rik, Ttc40
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444387
    NCBI Gene: 212124
Location & Maps
more
  • Sequence Map
    Chr7:139600951-139683817 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      82867 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 84.57 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    CFAP46, cilia and flagella associated protein 46
  • Human Ortholog
    CFAP46, cilia and flagella associated protein 46
    Orthology source: HGNC
  • Synonyms
    bA288G11.4, bA288G11.5, bB137A17.2, bB137A17.3, C10orf123, C10orf124, C10orf92, C10orf93, TTC40
  • Links
    NCBI Gene ID: 54777
    neXtProt AC: NX_Q8IYW2

  • Chr Location
    10q26.3; chr10:132808392-132943163 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    7
  • Gene trapped
    1
  • Radiation induced
    1
  • Targeted
    5
  • Genomic Mutations
    1 involving Cfap46
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031406 VEGA Gene Model | MGI Sequence Detail 82867 C57BL/6J ±  kb
transcript OTTMUST00000077823 VEGA | MGI Sequence Detail 8180 Not Applicable  
polypeptide OTTMUSP00000041244 VEGA | MGI Sequence Detail 2641 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    439 from dbSNP Build 142
Protein
Information
less
  • UniProt
    12 Sequences
  • InterPro Domains
    IPR011990 Tetratricopeptide-like helical domain
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 2
Other
Accession IDs
less
MGI:2685016
References
more
  • Summaries
    All 24
    Gene Ontology 1
    Phenotypes 10
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/12/2016
MGI 6.04
The Jackson Laboratory