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Cfap46 Gene Detail
Summary
  • Symbol
    Cfap46
  • Name
    cilia and flagella associated protein 46
  • Synonyms
    9330101J02Rik, E030019B06Rik, Ttc40
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444387
    NCBI Gene: 212124
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:139600951-139683817 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 84.57 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    439 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444387
protein coding gene Chr7:139600914-139684787 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033152
protein coding gene Chr7:144633162-144732740 (-)
A/J MGP_AJ_G0033134
protein coding gene Chr7:140547745-140634444 (-)
AKR/J MGP_AKRJ_G0033066
protein coding gene Chr7:144355968-144446047 (-)
BALB/cJ MGP_BALBcJ_G0033135
protein coding gene Chr7:140292677-140377742 (-)
C3H/HeJ MGP_C3HHeJ_G0032849
protein coding gene Chr7:144164936-144258853 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033646
protein coding gene Chr7:149972127-150065432 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030619
protein coding gene Chr7:141680339-141764644 (-)
CAST/EiJ MGP_CASTEiJ_G0032179
protein coding gene Chr7:136455629-136554385 (-)
CBA/J MGP_CBAJ_G0032822
protein coding gene Chr7:155029681-155132777 (-)
DBA/2J MGP_DBA2J_G0032974
protein coding gene Chr7:138503623-138592066 (-)
FVB/NJ MGP_FVBNJ_G0032927
protein coding gene Chr7:138389921-138473667 (-)
LP/J MGP_LPJ_G0033068
protein coding gene Chr7:146183393-146280711 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032959
protein coding gene Chr7:155722026-155815063 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033666
protein coding gene Chr7:143342947-143442797 (-)
PWK/PhJ MGP_PWKPhJ_G0031885
protein coding gene Chr7:131675182-131760564 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031730
protein coding gene Chr7:130182350-130269933 (-)
WSB/EiJ MGP_WSBEiJ_G0032290
protein coding gene Chr7:144262413-144352129 (-)



Homology
more
  • Human Ortholog
    CFAP46, cilia and flagella associated protein 46
  • Human Ortholog
    CFAP46, cilia and flagella associated protein 46
    Orthology source: HGNC
  • Synonyms
    bA288G11.4, bA288G11.5, bB137A17.2, bB137A17.3, C10orf123, C10orf124, C10orf92, C10orf93, TTC40
  • Links
    NCBI Gene ID: 54777
    neXtProt AC: NX_Q8IYW2
    UniProt: Q8IYW2

  • Chr Location
    10q26.3; chr10:132808392-132942585 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000049571 Ensembl Gene Model | MGI Sequence Detail 82867 C57BL/6J ±  kb
transcript ENSMUST00000129990 Ensembl | MGI Sequence Detail 8180 Not Applicable  
polypeptide ENSMUSP00000120186 Ensembl | MGI Sequence Detail 2641 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    12 Sequences
  • InterPro Domains
    IPR039586 Cilia- and flagella-associated protein 46
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 2
Other
Accession IDs
less
MGI:2685016
References
more
  • Summaries
    All 26
    Phenotypes 10
  • Earliest
    J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
01/19/2021
MGI 6.16
The Jackson Laboratory