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Ttc39a Gene Detail
Summary
  • Symbol
    Ttc39a
  • Name
    tetratricopeptide repeat domain 39A
  • Synonyms
    4922503N01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444350
    NCBI Gene: 230603
  • Gene Overview
    MyGene.info: TTC39A
Location & Maps
more
  • Sequence Map
    Chr4:109406623-109444745 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      38123 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 51.29 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    TTC39A, tetratricopeptide repeat domain 39A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TTC39A, tetratricopeptide repeat domain 39A
    Orthology source: HomoloGene
  • Synonyms
    C1orf34, DEME-6
  • Links
    NCBI Gene ID: 22996
    neXtProt AC: NX_Q5SRH9

  • Chr Location
    1p32.3; chr1:51287258-51345116 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    2
  • Gene trapped
    1
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    4 involving Ttc39a
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000008295 VEGA Gene Model | MGI Sequence Detail 38123 C57BL/6J ±  kb
transcript OTTMUST00000018873 VEGA | MGI Sequence Detail 1970 Not Applicable  
polypeptide OTTMUSP00000008668 VEGA | MGI Sequence Detail 578 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    474 from dbSNP Build 142
Protein
Information
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  • UniProt
    5 Sequences
  • Protein Ontology
    PR:000031228 tetratricopeptide repeat protein 39A
  • InterPro Domains
    IPR019412 Outer membrane protein Iml2/Tetratricopeptide repeat protein 39
    IPR011990 Tetratricopeptide-like helical domain
    IPR019734 Tetratricopeptide repeat
    IPR030416 Tetratricopeptide repeat protein 39A/B
Molecular
Reagents
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  • All nucleic 10
    cDNA 10

    Microarray probesets 2
References
more
  • Summaries
    All 20
    Developmental Gene Expression 2
    Phenotypes 9
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory