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Tmem88b Gene Detail
Summary
  • Symbol
    Tmem88b
  • Name
    transmembrane protein 88B
  • Synonyms
    A230069A22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444329
    NCBI Gene: 320587
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:155781591-155785874 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 87.36 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    49 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444329
protein coding gene Chr4:155781591-155785874 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029227
protein coding gene Chr4:160145154-160149292 (-)
A/J MGP_AJ_G0029192
protein coding gene Chr4:153400153-153404433 (-)
AKR/J MGP_AKRJ_G0029140
protein coding gene Chr4:157567562-157573838 (-)
BALB/cJ MGP_BALBcJ_G0029208
protein coding gene Chr4:153873289-153877428 (-)
C3H/HeJ MGP_C3HHeJ_G0028929
protein coding gene Chr4:158117733-158121904 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029657
protein coding gene Chr4:165825005-165829165 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026902
protein coding gene Chr4:145685247-145689530 (-)
CAST/EiJ MGP_CASTEiJ_G0028341
protein coding gene Chr4:155578932-155583317 (-)
CBA/J MGP_CBAJ_G0028891
protein coding gene Chr4:170837266-170844140 (-)
DBA/2J MGP_DBA2J_G0029040
protein coding gene Chr4:153421203-153425644 (-)
FVB/NJ MGP_FVBNJ_G0029003
protein coding gene Chr4:152668716-152672868 (-)
LP/J MGP_LPJ_G0029130
protein coding gene Chr4:160075406-160080730 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029030
protein coding gene Chr4:173649352-173654627 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029689
protein coding gene Chr4:158201758-158206938 (-)
PWK/PhJ MGP_PWKPhJ_G0028062
protein coding gene Chr4:149561576-149566754 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027896
protein coding gene Chr4:152451123-152455437 (-)
WSB/EiJ MGP_WSBEiJ_G0028421
protein coding gene Chr4:158373110-158378687 (-)



Homology
more
  • Human Ortholog
    TMEM88B, transmembrane protein 88B
  • Vertebrate Orthologs
    6
  • Human Ortholog
    TMEM88B, transmembrane protein 88B
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 643965
    neXtProt AC: NX_A6NKF7
    UniProt: A6NKF7

  • Chr Location
    1p36.33; chr1:1426128-1427787 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 320587 NCBI Gene Model | MGI Sequence Detail 4284 C57BL/6J ±  kb
transcript NM_001033394 RefSeq | MGI Sequence Detail 3471 C57BL/6  
polypeptide Q3TYP4 UniProt | EBI | MGI Sequence Detail 173 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 2
References
more
  • Summaries
    All 21
    Gene Ontology 3
    Phenotypes 1
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory