Slc38a12 MGI Mouse Gene Detail - MGI:2444222 - solute carrier family 38 member 12

Symbol

Slc38a12
Name

solute carrier family 38 member 12
Synonyms

C630005D06Rik, Tmem104

Feature Type

protein coding gene
IDs

MGI:2444222
NCBI Gene: 320534
Alliance

genome feature page
Transcription Start Sites

5 TSS

Sequence Map

Chr11:115078313-115137849 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 80.69 cM
Mapping Data

1 experiment

SNPs within 2kb

1840 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444222	protein coding gene	Chr11:115078313-115137851 (+)
129S1/SvImJ	ENSMUSG00200051947	protein coding gene	Chr11:112448543-112508628 (+)
A/J	ENSMUSG00195025525	protein coding gene	Chr11:112150475-112210405 (+)
AKR/J	ENSMUSG00220025797	protein coding gene	Chr11:112251504-112311391 (+)
BALB/cJ	ENSMUSG00180045625	protein coding gene	Chr11:112449175-112509260 (+)
C3H/HeJ	ENSMUSG00175044671	protein coding gene	Chr11:112402376-112462299 (+)
C57BL/6NJ	ENSMUSG00215046079	protein coding gene	Chr11:111938149-111997690 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017391	protein coding gene	Chr11:111031528-111090389 (+)
CAST/EiJ	ENSTCUG00005038988	protein coding gene	Chr11:111807346-111866939 (+)
CBA/J	ENSMUSG00210046942	protein coding gene	Chr11:112122409-112182299 (+)
DBA/2J	ENSMUSG00185026531	protein coding gene	Chr11:112441328-112500902 (+)
FVB/NJ	ENSMUSG00205025241	protein coding gene	Chr11:112241597-112301166 (+)
JF1/MsJ	ENSUMUG00000018632	protein coding gene	Chr11:112710610-112771113 (+)
LP/J	ENSMUSG00230050321	protein coding gene	Chr11:113495784-113555703 (+)
NOD/ShiLtJ	ENSMUSG00190028990	protein coding gene	Chr11:112473082-112533153 (+)
NZO/HlLtJ	ENSMUSG00225052252	protein coding gene	Chr11:115551196-115611279 (+)
PWK/PhJ	ENSLUMG00010015445	protein coding gene	Chr11:112224549-112284689 (+)
SPRET/EiJ	ENSMSPG00010042773	protein coding gene	Chr11:112736673-112796270 (+)
WSB/EiJ	ENSIUOG00005041493	protein coding gene	Chr11:112211089-112271173 (+)

Human Ortholog

SLC38A12, solute carrier family 38 member 12

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

SLC38A12, solute carrier family 38 member 12
Synonyms

TMEM104
Links

HGNC:25984

NCBI Gene ID: 54868

UniProt: Q8NE00
Chr Location

17q25.1; chr17:74776477-74839753 (+) GRCh38

MGI Vertebrate Homology

Slc38a12 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: SLC38A12
Gene Tree

Slc38a12

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Phenotype Summary

5 phenotype references

All Mutations and Alleles

7
Gene trapped

5
Targeted

2
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

30 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

610
Tissues

13
cDNA Data

30
Literature Summary

1

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase slc38a12

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All Sequences

67
RefSeq

4
UniProt

3
CCDS

CCDS25623.1

Ensembl

ENSMUSG00000045980 (Evidence)
NCBI Gene

320534

			Length	Strain/Species	Flank
genomic	ENSMUSG00000045980	Ensembl Gene Model \| MGI Sequence Detail	59537	C57BL/6J	± kb
transcript	ENSMUST00000061450	Ensembl \| MGI Sequence Detail	4564	Not Applicable
polypeptide	ENSMUSP00000056805	Ensembl \| MGI Sequence Detail	496	Not Applicable

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UniProt

3 Sequences
Protein Ontology

PR:000029795 putative sodium-coupled neutral amino acid transporter 12

(term hierarchy)
InterPro Domains

IPR013057 Amino acid transporter, transmembrane domain
GlyGen

Q3TB48 1 site

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All nucleic 30

cDNA 30

Microarray probesets 4

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MGI:8330067

Summaries

All 28

Developmental Gene Expression 1

Gene Ontology 1

Phenotypes 5
Earliest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Slc38a12:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105849	Chr11:115078307-115078388 (+)	35 bp
Tssr3728	Chr11:115078394-115078397 (+)	83 bp
Tssr3730	Chr11:115080403-115080453 (+)	2,115 bp
Tssr105850	Chr11:115106586-115106594 (+)	28,277 bp
Tssr105851	Chr11:115136088-115136106 (+)	57,784 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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