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Ahdc1 Gene Detail
Summary
  • Symbol
    Ahdc1
  • Name
    AT hook, DNA binding motif, containing 1
  • Synonyms
    D030015G18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444218
    NCBI Gene: 230793
Location & Maps
more
  • Sequence Map
    Chr4:133011260-133077863 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      66604 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 66.18 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    AHDC1, AT-hook DNA binding motif containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    AHDC1, AT-hook DNA binding motif containing 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    MRD25
  • Links
    NCBI Gene ID: 27245
    neXtProt AC: NX_Q5TGY3

  • Chr Location
    1p36.13; chr1:27534245-27604178 (-)  GRCh38.p2

Human Diseases
more
  • Diseases
    1 with human AHDC1 associations

Human Disease Mouse Models
       Xia-Gibbs Syndrome   OMIM: 615829
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    16 phenotype references
  • All Mutations and Alleles
    329
  • Chemically induced (other)
    2
  • Gene trapped
    324
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    4 involving Ahdc1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000010097 VEGA Gene Model | MGI Sequence Detail 66604 C57BL/6J ±  kb
transcript OTTMUST00000023489 VEGA | MGI Sequence Detail 6341 Not Applicable  
polypeptide OTTMUSP00000010728 VEGA | MGI Sequence Detail 1594 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    496 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000029264 AT-hook DNA-binding motif-containing protein 1
  • InterPro Domains
    IPR032757 Domain of unknown function DUF4683
Molecular
Reagents
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  • All nucleic 10
    cDNA 8
    Primer pair 1
    Other 1

    Microarray probesets 4
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 16
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
  • Latest
    J:220876 Quintero-Rivera F, et al., MATR3 disruption in human and mouse associated with bicuspid aortic valve, aortic coarctation and patent ductus arteriosus. Hum Mol Genet. 2015 Apr 15;24(8):2375-89

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory