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Ahdc1 Gene Detail
Summary
  • Symbol
    Ahdc1
  • Name
    AT hook, DNA binding motif, containing 1
  • Synonyms
    D030015G18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444218
    NCBI Gene: 230793
  • Alliance
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:133011265-133078110 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 66.18 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    497 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444218
protein coding gene Chr4:133011260-133078110 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028885
protein coding gene Chr4:135225906-135299261 (+)
A/J MGP_AJ_G0028844
protein coding gene Chr4:129585616-129652024 (+)
AKR/J MGP_AKRJ_G0028797
protein coding gene Chr4:133251121-133322369 (+)
BALB/cJ MGP_BALBcJ_G0028867
protein coding gene Chr4:130201057-130272565 (+)
C3H/HeJ MGP_C3HHeJ_G0028581
protein coding gene Chr4:133502149-133576105 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029309
protein coding gene Chr4:140085426-140161066 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026580
protein coding gene Chr4:122657447-122731480 (+)
CAST/EiJ MGP_CASTEiJ_G0028014
protein coding gene Chr4:131599242-131667551 (+)
CBA/J MGP_CBAJ_G0028547
protein coding gene Chr4:143703494-143785753 (+)
DBA/2J MGP_DBA2J_G0028696
protein coding gene Chr4:130003603-130071781 (+)
FVB/NJ MGP_FVBNJ_G0028663
protein coding gene Chr4:128865999-128940009 (+)
LP/J MGP_LPJ_G0028797
protein coding gene Chr4:135359470-135436892 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028689
protein coding gene Chr4:148279681-148350324 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029347
protein coding gene Chr4:133663241-133735537 (+)
PWK/PhJ MGP_PWKPhJ_G0027735
protein coding gene Chr4:126705125-126773700 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027561
protein coding gene Chr4:129519510-129587805 (+)
WSB/EiJ MGP_WSBEiJ_G0028094
protein coding gene Chr4:133835857-133908045 (+)



Homology
more
  • Human Ortholog
    AHDC1, AT-hook DNA binding motif containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    AHDC1, AT-hook DNA binding motif containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    MRD25
  • Links
    NCBI Gene ID: 27245
    neXtProt AC: NX_Q5TGY3
    UniProt: Q5TGY3

  • Chr Location
    1p36.11-p35.3; chr1:27534245-27604178 (-)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human AHDC1 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    16 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 230793 NCBI Gene Model | MGI Sequence Detail 66846 C57BL/6J ±  kb
transcript NM_146155 RefSeq | MGI Sequence Detail 6602 C57BL/6  
polypeptide Q6PAL7 UniProt | EBI | MGI Sequence Detail 1594 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 9
    Primer pair 1
    Other 1

    Microarray probesets 4
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 16
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:220876 Quintero-Rivera F, et al., MATR3 disruption in human and mouse associated with bicuspid aortic valve, aortic coarctation and patent ductus arteriosus. Hum Mol Genet. 2015 Apr 15;24(8):2375-89

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory