D830050J10Rik MGI Mouse Gene Detail - MGI:2444203

Symbol

D830050J10Rik
Name

RIKEN cDNA D830050J10 gene

Feature Type

lncRNA gene
IDs

MGI:2444203
NCBI Gene: 352968
Alliance

genome feature page
Transcription Start Sites

3 TSS

Sequence Map

Chr6:115652929-115655328 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 6, 53.65 cM
Mapping Data

1 experiment

SNPs within 2kb

94 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444203	lncRNA gene	Chr6:115652929-115657658 (+)
129S1/SvImJ	ENSMUSG00200052012	lncRNA gene	Chr6:112875060-112876872 (+)
129S1/SvImJ	ENSMUSG00200044843	protein coding gene	Chr6:112875060-112877222 (+)
A/J	ENSMUSG00195044682	protein coding gene	Chr6:112259175-112261337 (+)
A/J	ENSMUSG00195049360	lncRNA gene	Chr6:112259175-112260987 (+)
AKR/J	ENSMUSG00220033836	protein coding gene	Chr6:111178824-111180980 (+)
AKR/J	ENSMUSG00220037308	lncRNA gene	Chr6:111178824-111180630 (+)
BALB/cJ	ENSMUSG00180049987	lncRNA gene	Chr6:112625537-112627349 (+)
BALB/cJ	ENSMUSG00180038257	protein coding gene	Chr6:112625537-112627699 (+)
C3H/HeJ	ENSMUSG00175036011	lncRNA gene	Chr6:64800411-64802217 (-)
C3H/HeJ	ENSMUSG00175028502	protein coding gene	Chr6:64800061-64802217 (-)
C57BL/6NJ	ENSMUSG00215048819	lncRNA gene	Chr6:112611912-112613724 (+)
C57BL/6NJ	ENSMUSG00215047150	protein coding gene	Chr6:112611912-112614074 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004312	bidirectional promoter lncRNA gene	Chr6:110777882-110779681 (+)
CAST/EiJ	ENSTCUG00005030622	lncRNA gene	Chr6:112480788-112482601 (+)
CBA/J	ENSMUSG00210039777	protein coding gene	Chr6:112435627-112437783 (+)
CBA/J	ENSMUSG00210045631	lncRNA gene	Chr6:112435627-112437433 (+)
DBA/2J	ENSMUSG00185048569	lncRNA gene	Chr6:113073584-113075396 (+)
DBA/2J	ENSMUSG00185043793	protein coding gene	Chr6:113073584-113075746 (+)
FVB/NJ	ENSMUSG00205027305	lncRNA gene	Chr6:111518345-111520156 (+)
FVB/NJ	ENSMUSG00205019588	protein coding gene	Chr6:111518345-111520506 (+)
JF1/MsJ	ENSUMUG00000032236	lncRNA gene	Chr6:111723905-111725711 (+)
LP/J	ENSMUSG00230049128	lncRNA gene	Chr6:114277908-114279720 (+)
LP/J	ENSMUSG00230047128	protein coding gene	Chr6:114277908-114280070 (+)
NOD/ShiLtJ	ENSMUSG00190043013	protein coding gene	Chr6:112027772-112029934 (+)
NOD/ShiLtJ	ENSMUSG00190051373	lncRNA gene	Chr6:112027772-112029584 (+)
NZO/HlLtJ	ENSMUSG00225045400	protein coding gene	Chr6:116133577-116135739 (+)
NZO/HlLtJ	ENSMUSG00225048259	lncRNA gene	Chr6:116133577-116135389 (+)
PWK/PhJ	ENSLUMG00010028381	lncRNA gene	Chr6:111029238-111031043 (+)
SPRET/EiJ	ENSMSPG00010045526	lncRNA gene	Chr6:113821945-113823757 (+)
WSB/EiJ	ENSIUOG00005025397	lncRNA gene	Chr6:112770943-112772754 (+)

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Gene Tree

D830050J10Rik

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Phenotype Summary

6 phenotype references

All Mutations and Alleles

1
Spontaneous

1
Genomic Mutations

1 involving D830050J10Rik
Find Mice (IMSR)

1 strains or lines available

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

4

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

41
RefSeq

1
UniProt

2

Ensembl

ENSMUSG00000107994 (Evidence)
NCBI Gene

352968

			Length	Strain/Species	Flank
genomic	352968	NCBI Gene Model \| MGI Sequence Detail	2400	C57BL/6J	± kb
transcript	NR_152134	RefSeq \| MGI Sequence Detail	2400	C57BL/6
polypeptide	Q8C6X7	UniProt \| EBI \| MGI Sequence Detail	196	Not Applicable

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UniProt

2 Sequences

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All nucleic 4

cDNA 4

Microarray probesets 1

Summaries

All 16

Phenotypes 6
Earliest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Latest

J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376

TSS for D830050J10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58320	Chr6:115652905-115652917 (+)	-18 bp
Tssr58321	Chr6:115652944-115652965 (+)	26 bp
Tssr58322	Chr6:115653675-115653715 (+)	766 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/08/2026 MGI 6.24