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Cachd1 Gene Detail
Summary
  • Symbol
    Cachd1
  • Name
    cache domain containing 1
  • Synonyms
    1190007F10Rik, B430218L07Rik, Vwcd1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444177
    NCBI Gene: 320508
  • Gene Overview
    MyGene.info: CACHD1
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:100776679-101003749 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 45.76 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1859 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444177
protein coding gene Chr4:100776675-101029220 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028488
protein coding gene Chr4:101048302-101313337 (+)
A/J MGP_AJ_G0028451
protein coding gene Chr4:97526260-97781361 (+)
AKR/J MGP_AKRJ_G0028398
protein coding gene Chr4:99877017-100137028 (+)
BALB/cJ MGP_BALBcJ_G0028469
protein coding gene Chr4:97742350-97987412 (+)
C3H/HeJ MGP_C3HHeJ_G0028182
protein coding gene Chr4:100689794-100939982 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028908
protein coding gene Chr4:104882739-105150110 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026200
protein coding gene Chr4:92829291-93070132 (+)
CAST/EiJ MGP_CASTEiJ_G0027622
protein coding gene Chr4:98479614-98726966 (+)
CBA/J MGP_CBAJ_G0028151
protein coding gene Chr4:108170789-108457715 (+)
DBA/2J MGP_DBA2J_G0028301
protein coding gene Chr4:97227421-97478625 (+)
FVB/NJ MGP_FVBNJ_G0028268
protein coding gene Chr4:96062728-96319924 (+)
LP/J MGP_LPJ_G0028401
protein coding gene Chr4:101346682-101618672 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028296
protein coding gene Chr4:113746561-114010169 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028946
protein coding gene Chr4:100132042-100385985 (+)
PWK/PhJ MGP_PWKPhJ_G0027347
protein coding gene Chr4:95404386-95650161 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027169
protein coding gene Chr4:97590726-97857488 (+)
WSB/EiJ MGP_WSBEiJ_G0027700
protein coding gene Chr4:100294740-100554257 (+)



Homology
more
  • Human Ortholog
    CACHD1, cache domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CACHD1, cache domain containing 1
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 57685
    neXtProt AC: NX_Q5VU97
    UniProt: Q5VU97

  • Chr Location
    1p31.3; chr1:64470793-64693058 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 10854
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CACHD1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 320508 NCBI Gene Model | MGI Sequence Detail 227071 C57BL/6J ±  kb
transcript NM_198037 RefSeq | MGI Sequence Detail 4981 C57BL/6  
polypeptide Q6PDJ1 UniProt | EBI | MGI Sequence Detail 1288 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR029151 Periplasmic sensor-like domain superfamily
    IPR036465 von Willebrand factor A-like domain superfamily
    IPR002035 von Willebrand factor, type A
    IPR013608 VWA N-terminal
Molecular
Reagents
less
  • All nucleic 82
    cDNA 82

    Microarray probesets 4
Other
Accession IDs
less
MGI:1916110, MGI:2140392
References
more
  • Summaries
    All 37
    Developmental Gene Expression 3
    Gene Ontology 3
    Phenotypes 13
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:243411 Rutledge EA, et al., Cellular heterogeneity in the ureteric progenitor niche and distinct profiles of branching morphogenesis in organ development. Development. 2017 Sep 01;144(17):3177-3188

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory