5930403N24Rik Gene Detail

Summary

• Symbol
  5930403N24Rik
• Name
  RIKEN cDNA 5930403N24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444171
  NCBI Gene: 100040846
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:37015316-37027314 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 19.49 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  320 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444171	lncRNA gene	Chr10:37015316-37027981 (+)
129S1/SvImJ	ENSMUSG00200009183	lncRNA gene	Chr10:33861921-33873855 (+)
A/J	ENSMUSG00195018657	lncRNA gene	Chr10:34169755-34181679 (+)
AKR/J	ENSMUSG00220028240	lncRNA gene	Chr10:33848633-33860551 (+)
BALB/cJ	ENSMUSG00180017600	lncRNA gene	Chr10:34258257-34270178 (+)
C3H/HeJ	ENSMUSG00175012499	lncRNA gene	Chr10:34045933-34057849 (+)
C57BL/6NJ	ENSMUSG00215010142	lncRNA gene	Chr10:33806773-33818694 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013272	unclassified non-coding RNA gene	Chr10:32724077-32736612 (+)
CAST/EiJ	ENSTCUG00005029575	lncRNA gene	Chr10:34268749-34280913 (+)
CBA/J	ENSMUSG00210026314	lncRNA gene	Chr10:33946438-33958355 (+)
DBA/2J	ENSMUSG00185008206	lncRNA gene	Chr10:34098762-34110682 (+)
FVB/NJ	ENSMUSG00205013302	lncRNA gene	Chr10:34037864-34049795 (+)
JF1/MsJ	ENSUMUG00000039481	lncRNA gene	Chr10:33860177-33872407 (+)
LP/J	ENSMUSG00230016679	lncRNA gene	Chr10:35859487-35871406 (+)
NOD/ShiLtJ	ENSMUSG00190035111	lncRNA gene	Chr10:34223919-34235836 (+)
NZO/HlLtJ	ENSMUSG00225033588	lncRNA gene	Chr10:40117456-40129381 (+)
PWK/PhJ	ENSLUMG00010007993	lncRNA gene	Chr10:33982266-33994477 (+)
SPRET/EiJ	ENSMSPG00010021939	lncRNA gene	Chr10:34941000-34953420 (+)
WSB/EiJ	ENSIUOG00005015429	lncRNA gene	Chr10:33708247-33726530 (+)

Homology

• Gene Tree
  5930403N24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 5930403N24Rik
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000046463 (Evidence)
• NCBI Gene
  100040846

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000046463	Ensembl Gene Model | MGI Sequence Detail	11999	C57BL/6J
transcript	ENSMUST00000188813	Ensembl | MGI Sequence Detail	4047	Not Applicable
polypeptide	Q8BMI2	UniProt | EBI | MGI Sequence Detail	124	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 5930403N24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92962	Chr10:37013522-37013526 (+)	-1,792 bp
Tssr92963	Chr10:37015521-37015536 (+)	213 bp