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Rccd1 Gene Detail
Summary
  • Symbol
    Rccd1
  • Name
    RCC1 domain containing 1
  • Synonyms
    E430018M08Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444156
    NCBI Gene: 269955
Location & Maps
more
  • Sequence Map
    Chr7:80293229-80324454 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      31226 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 45.64 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    RCCD1, RCC1 domain containing 1
  • Vertebrate Orthologs
    11
  • Human Ortholog
    RCCD1, RCC1 domain containing 1
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 91433
    neXtProt AC: NX_A6NED2

  • Chr Location
    15q26.1; chr15:90954695-90963543 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 16782
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;2 zebrafish
  • HCOP
    human homology predictions: RCCD1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    17 phenotype references
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Radiation induced
    2
  • Targeted
    4
  • Genomic Mutations
    3 involving Rccd1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029013 VEGA Gene Model | MGI Sequence Detail 31226 C57BL/6J ±  kb
transcript OTTMUST00000071976 VEGA | MGI Sequence Detail 2324 Not Applicable  
polypeptide OTTMUSP00000036963 VEGA | MGI Sequence Detail 377 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    471 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000032361 RCC1 domain-containing protein 1
  • InterPro Domains
    IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
    IPR000408 Regulator of chromosome condensation, RCC1
Molecular
Reagents
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  • All nucleic 19
    Genomic 1
    cDNA 18

    Microarray probesets 3
References
more
  • Summaries
    All 24
    Gene Ontology 1
    Phenotypes 17
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory