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Clec1a Gene Detail
Summary
  • Symbol
    Clec1a
  • Name
    C-type lectin domain family 1, member a
  • Synonyms
    5930406N14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444151
    NCBI Gene: 243653
  • Gene Overview
    MyGene.info: CLEC1A
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:129426684-129452000 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 63.32 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    255 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444151
protein coding gene Chr6:129424772-129452000 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031348
protein coding gene Chr6:133100092-133123076 (-)
A/J MGP_AJ_G0031319
protein coding gene Chr6:128004119-128027399 (-)
AKR/J MGP_AKRJ_G0031247
protein coding gene Chr6:131504149-131527142 (-)
BALB/cJ MGP_BALBcJ_G0031326
protein coding gene Chr6:127649153-127675248 (-)
C3H/HeJ MGP_C3HHeJ_G0031050
protein coding gene Chr6:131697574-131720561 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031785
protein coding gene Chr6:136595087-136618081 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028931
protein coding gene Chr6:126325832-126353246 (-)
CAST/EiJ MGP_CASTEiJ_G0030428
protein coding gene Chr6:131931536-131954564 (-)
CBA/J MGP_CBAJ_G0031010
protein coding gene Chr6:141972344-141995331 (-)
DBA/2J MGP_DBA2J_G0031167
protein coding gene Chr6:126956732-126979691 (-)
FVB/NJ MGP_FVBNJ_G0031117
protein coding gene Chr6:125839518-125862546 (-)
LP/J MGP_LPJ_G0031247
protein coding gene Chr6:133317647-133340634 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031155
protein coding gene Chr6:145813112-145843136 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031818
protein coding gene Chr6:131564664-131587847 (-)
PWK/PhJ MGP_PWKPhJ_G0030146
protein coding gene Chr6:125236452-125260531 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029975
protein coding gene Chr6:129584922-129609206 (-)
WSB/EiJ MGP_WSBEiJ_G0030516
protein coding gene Chr6:131989355-132019451 (-)



Homology
more
  • Human Ortholog
    CLEC1A, C-type lectin domain family 1 member A
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CLEC1A, C-type lectin domain family 1 member A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CLEC1, CLEC-1
  • Links
    NCBI Gene ID: 51267
    neXtProt AC: NX_Q8NC01
    UniProt: Q8NC01

  • Chr Location
    12p13.2; chr12:10069504-10099065 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 243653 NCBI Gene Model | MGI Sequence Detail 25317 C57BL/6J ±  kb
transcript NM_175526 RefSeq | MGI Sequence Detail 3268 C57BL/6  
polypeptide Q8BWY2 UniProt | EBI | MGI Sequence Detail 269 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 3
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory