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Phf20
Gene Detail
Symbol

Name
ID
Phf20
PHD finger protein 20
MGI:2444148
Synonyms
6820402O20Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 2
77.38 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr2:156196466-156309952 bp, + strand
From VEGA annotation of GRCm38

  113487 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9507  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Gene Tree: Phf20

Human
homologs
Human Homolog PHF20, PHD finger protein 20
NCBI Gene ID 51230
neXtProt AC  NX_Q9BVI0
Human Synonyms  C20orf104, GLEA2, HCA58, NZF, TDRD20A, TZP
Human Chr (Location)  20q11.22-q11.23; chr20:35772001-35950370 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(308) : Gene trapped(306) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Phf20 interacts with 370 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (20 annotations)
Process chromatin modification, histone H4-K16 acetylation, ...
Component cytoplasm, histone acetyltransferase complex, ...
Function DNA binding, histone acetyltransferase activity (H4-K16 specific), ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (60)    Tissues (39)    Images (5)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 52
RT-PCR 8
cDNA source data(16)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(18) cDNA(16) Primer pair(2)
Microarray probesets(12)
Other database
links
VEGA Gene ModelOTTMUSG00000016135 (Evidence)
Ensembl Gene ModelENSMUSG00000038116 (Evidence)
Entrez Gene228829 (Evidence)
DFCITC1609998, TC1603310, TC1572646, TC1613809, TC1677061
DoTSDT.97382960, DT.94262771, DT.94236790, DT.101137265, DT.489198, DT.94197284, DT.110691873, DT.101737791, DT.102536363
Consensus CDS ProjectCCDS38297.1
International Mouse Knockout Project StatusPhf20
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016135 VEGA Gene Model | MGI Sequence Detail 113487 C57BL/6J ±  kb
transcript OTTMUST00000038578 VEGA | MGI Sequence Detail 5737 Not Applicable 
polypeptide OTTMUSP00000017265 VEGA | MGI Sequence Detail 1010 Not Applicable 

For the selected sequences
All sequences(87) RefSeq(14) UniProt(5)
Polymorphisms
SNPs within 2kb(639 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR017956 AT hook, DNA-binding motif
InterPro IPR022255 Protein of unknown function DUF3776
InterPro IPR002999 Tudor domain
InterPro IPR007087 Zinc finger, C2H2
InterPro IPR015880 Zinc finger, C2H2-like
InterPro IPR011011 Zinc finger, FYVE/PHD-type
InterPro IPR019787 Zinc finger, PHD-finger
InterPro IPR001965 Zinc finger, PHD-type
InterPro IPR019786 Zinc finger, PHD-type, conserved site
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
Protein Ontology PR:000012647 PHD finger protein 20
References
(Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(38)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory