About   Help   FAQ
A430078I02Rik Gene Detail
Summary
  • Symbol
    A430078I02Rik
  • Name
    RIKEN cDNA A430078I02 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2444132
    NCBI Gene: 320486
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:86447259-86457812 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 37.70 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    95 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444132
 lncRNA gene Chr6:86447259-86457812 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004307
 antisense lncRNA gene Chr6:87757926-87768475 (-)
A/J MGP_AJ_G0004285
 antisense lncRNA gene Chr6:84373023-84383575 (-)
AKR/J MGP_AKRJ_G0004267
 antisense lncRNA gene Chr6:86819697-86830249 (-)
BALB/cJ MGP_BALBcJ_G0004271
 antisense lncRNA gene Chr6:84380026-84391086 (-)
C3H/HeJ MGP_C3HHeJ_G0004234
 antisense lncRNA gene Chr6:97638052-97648606 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004420
 antisense lncRNA gene Chr6:90142076-90152629 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0004181
 antisense lncRNA gene Chr6:86885791-86896321 (-)
CBA/J MGP_CBAJ_G0004213
 antisense lncRNA gene Chr6:93686267-93696819 (-)
DBA/2J MGP_DBA2J_G0004229
 antisense lncRNA gene Chr6:83690462-83701015 (-)
FVB/NJ MGP_FVBNJ_G0004245
 antisense lncRNA gene Chr6:82873916-82884526 (-)
LP/J MGP_LPJ_G0004308
 antisense lncRNA gene Chr6:87797985-87808539 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004236
 antisense lncRNA gene Chr6:97811052-97822424 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004418
 antisense lncRNA gene Chr6:86657896-86668448 (-)
PWK/PhJ MGP_PWKPhJ_G0004134
 antisense lncRNA gene Chr6:82632906-82643565 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004077
 antisense lncRNA gene Chr6:85496682-85507355 (-)
WSB/EiJ MGP_WSBEiJ_G0004218
 antisense lncRNA gene Chr6:87112397-87122949 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 320486 NCBI Gene Model | MGI Sequence Detail 10554 C57BL/6J ±  kb
transcript NR_131125 RefSeq | MGI Sequence Detail 2761 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3
Other
Accession IDs
less
MGI:2141798
References
more
  • Summaries
    All 15
    Phenotypes 7
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory