C330024D21Rik Gene Detail

Summary

• Symbol
  C330024D21Rik
• Name
  RIKEN cDNA C330024D21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2444116
  NCBI Gene: 320479
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:67621240-67634975 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 36.09 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2444116	lncRNA gene	Chr5:67621240-67635242 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015603	unclassified non-coding RNA gene	Chr5:67239781-67254939 (+)
A/J	MGP_AJ_G0015579	unclassified non-coding RNA gene	Chr5:64724934-64739471 (+)
AKR/J	MGP_AKRJ_G0015543	unclassified non-coding RNA gene	Chr5:66798700-66814042 (+)
BALB/cJ	MGP_BALBcJ_G0015541	unclassified non-coding RNA gene	Chr5:65399763-65413721 (+)
C3H/HeJ	MGP_C3HHeJ_G0015363	unclassified non-coding RNA gene	Chr5:67114289-67128764 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015995	unclassified non-coding RNA gene	Chr5:70023913-70038245 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013730	unclassified non-coding RNA gene	Chr5:60767036-60780351 (+)
CAST/EiJ	MGP_CASTEiJ_G0014919	unclassified non-coding RNA gene	Chr5:66296901-66312974 (+)
CBA/J	MGP_CBAJ_G0015344	unclassified non-coding RNA gene	Chr5:72263071-72278994 (+)
DBA/2J	MGP_DBA2J_G0015438	unclassified non-coding RNA gene	Chr5:64738978-64753100 (+)
FVB/NJ	MGP_FVBNJ_G0015445	unclassified non-coding RNA gene	Chr5:63910119-63923915 (+)
LP/J	MGP_LPJ_G0015519	unclassified non-coding RNA gene	Chr5:67737069-67751695 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015468	unclassified non-coding RNA gene	Chr5:75061813-75076679 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016037	unclassified non-coding RNA gene	Chr5:66461025-66476078 (+)
PWK/PhJ	MGP_PWKPhJ_G0014704	unclassified non-coding RNA gene	Chr5:63776415-63790325 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014492	unclassified non-coding RNA gene	Chr5:65790132-65805536 (+)
WSB/EiJ	MGP_WSBEiJ_G0015023	unclassified non-coding RNA gene	Chr5:66692447-66707166 (+)

Homology

• Gene Tree
  C330024D21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  19 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Gene trapped
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving C330024D21Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000107385 (Evidence)
• NCBI Gene
  320479

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107385	Ensembl Gene Model | MGI Sequence Detail	13736	C57BL/6J
transcript	ENSMUST00000201973	Ensembl | MGI Sequence Detail	2764	Not Applicable
polypeptide	Q3TE67	UniProt | EBI | MGI Sequence Detail	81	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 1

References

• Summaries
  All 30

  Phenotypes 19
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for C330024D21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46586	Chr5:67621229-67621280 (+)	15 bp
Tssr1502	Chr5:67631266-67631269 (+)	10,028 bp