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Amdhd2
Gene Detail
Symbol

Name
ID
Amdhd2
amidohydrolase domain containing 2
MGI:2443978
Synonyms
5730457F11Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 17
12.28 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr17:24155833-24163766 bp, - strand
From VEGA annotation of GRCm38

  7934 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9311  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: AMDHD2
Protein SuperFamily: N-acetylglucosamine-6-phosphate deacetylase
Gene Tree: Amdhd2

Human
homologs
AMDHD2, amidohydrolase domain containing 2
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 51005
neXtProt AC: NX_Q9Y303

Human Synonyms: CGI-14

Human Chr (Location): 16p13.3; chr16:2520362-2530954 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Gene trapped(8) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Amdhd2 interacts with 32 markers (Mir1a-1, Mir1a-2, Mir29a, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
Data Summary: Results (96)    Tissues (95)    Images (3)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 96
cDNA source data(46)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase amdhd2 ; ZFIN amdhd2    NEW 
Molecular
reagents
All nucleic(46) cDNA(46)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000023853 (Evidence)
Ensembl Gene Model ENSMUSG00000036820 (Evidence)
Entrez Gene 245847 (Evidence)
UniGene 87319
DFCI TC1580980, TC1676344, TC1677735
DoTS DT.110567263, DT.531307, DT.55101139
NIA Mouse Gene Index U037517
EC 3.5.1.25
Consensus CDS Project CCDS28475.1
International Mouse Phenotyping Consortium Status Amdhd2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023853 VEGA Gene Model | MGI Sequence Detail 7934 C57BL/6J ±  kb
transcript OTTMUST00000058270 VEGA | MGI Sequence Detail 1496 Not Applicable 
polypeptide OTTMUSP00000028207 VEGA | MGI Sequence Detail 409 Not Applicable 

For the selected sequences
All sequences(53) RefSeq(2) UniProt(3)
Polymorphisms
SNPs within 2kb(78 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006680 Amidohydrolase-related
InterPro IPR011059 Metal-dependent hydrolase, composite domain
InterPro IPR003764 N-acetylglucosamine-6-phosphate deacetylase
Protein Ontology PR:000031022 N-acetylglucosamine-6-phosphate deacetylase
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:188842 Bergfeld AK, et al., Metabolism of vertebrate amino sugars with N-glycolyl groups: elucidating the intracellular fate of the non-human sialic acid N-glycolylneuraminic acid. J Biol Chem. 2012 Aug 17;287(34):28865-81
All references(31)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory