About   Help   FAQ
A730089K16Rik Gene Detail
Summary
  • Symbol
    A730089K16Rik
  • Name
    RIKEN cDNA A730089K16 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2443970
    NCBI Gene: 320411
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:76803776-76806202 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 41.34 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    18 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443970
 lncRNA gene Chr5:76803776-76806202 (-)
129S1/SvImJ MGP_129S1SvImJ_G0001639
 unclassified gene Chr5:76853931-76856357 (-)
A/J MGP_AJ_G0001620
 unclassified gene Chr5:73924418-73926849 (-)
AKR/J MGP_AKRJ_G0001605
 unclassified gene Chr5:76334941-76337372 (-)
BALB/cJ MGP_BALBcJ_G0001616
 unclassified gene Chr5:74654796-74657222 (-)
C3H/HeJ MGP_C3HHeJ_G0001593
 unclassified gene Chr5:76704378-76706809 (-)
C57BL/6NJ MGP_C57BL6NJ_G0001733
 unclassified gene Chr5:79919963-79922389 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0001413
 unclassified gene Chr5:69552706-69555102 (-)
CAST/EiJ MGP_CASTEiJ_G0001566
 unclassified gene Chr5:75904635-75907036 (-)
CBA/J MGP_CBAJ_G0001584
 unclassified gene Chr5:82556212-82558643 (-)
DBA/2J MGP_DBA2J_G0001587
 unclassified gene Chr5:73982580-73985011 (-)
FVB/NJ MGP_FVBNJ_G0001596
 unclassified gene Chr5:73181799-73184230 (-)
LP/J MGP_LPJ_G0001643
 unclassified gene Chr5:77291954-77294380 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0001578
 unclassified gene Chr5:85713700-85716116 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0001723
 unclassified gene Chr5:75880915-75883341 (-)
PWK/PhJ MGP_PWKPhJ_G0001524
 unclassified gene Chr5:72999526-73001914 (-)
SPRET/EiJ MGP_SPRETEiJ_G0001491
 unclassified gene Chr5:75239351-75241762 (-)
WSB/EiJ MGP_WSBEiJ_G0001584
 unclassified gene Chr5:76204087-76206515 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    2
  • cDNA Data
    4
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    23
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000103529 Ensembl Gene Model | MGI Sequence Detail 2427 C57BL/6J ±  kb
transcript AK043374 GenBank | ENA | DDBJ | MGI Sequence Detail 2359 C57BL/6J  
polypeptide Q8C904 UniProt | EBI | MGI Sequence Detail 256 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
References
more
  • Summaries
    All 11
    Developmental Gene Expression 1
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory