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Snapc4
Gene Detail
 Symbol
Name
ID
Snapc4
small nuclear RNA activating complex, polypeptide 4
MGI:2443935
Synonyms 5730436L13Rik
Feature Type protein coding gene
Genetic Map
Chromosome 2
18.87 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr2:26362765-26380653 bp, - strand
From VEGA annotation of GRCm38

  17889 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:2321  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Snapc4

Human
homologs
Human Homolog SNAPC4, small nuclear RNA activating complex, polypeptide 4, 190kDa
NCBI Gene ID 6621
neXtProt AC  NX_Q5SXM2
Human Synonyms  PTFalpha, SNAP190
Human Chr (Location)  9q34.3; chr9:136375569-136400208 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(1) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Snapc4 interacts with 60 markers (Mir22, Mir133b, Mir140, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process regulation of transcription, DNA-templated, snRNA transcription from RNA polymerase III promoter, ...
Component nucleus, snRNA-activating protein complex
Function chromatin binding, DNA binding
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (61)    Tissues (40)    Images (6)
Theiler Stages: 2, 3, 4, 5, 17, 21, 23, 27, 28
Assay TypeResults
RNA in situ 53
RT-PCR 8
cDNA source data(52)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(53) cDNA(52) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000012774 (Evidence)
Ensembl Gene ModelENSMUSG00000036281 (Evidence)
Entrez Gene227644 (Evidence)
UniGene207460
DFCITC1580964, TC1594621, TC1603398, TC1707907
DoTSDT.101391946, DT.101735912, DT.91434851, DT.94163768, DT.94285411, DT.99856207
Consensus CDS ProjectCCDS15802.1
International Mouse Knockout Project StatusSnapc4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000012774 VEGA Gene Model | MGI Sequence Detail 17889 C57BL/6J ±  kb
transcript OTTMUST00000030563 VEGA | MGI Sequence Detail 4368 Not Applicable 
polypeptide OTTMUSP00000013728 VEGA | MGI Sequence Detail 1333 Not Applicable 

For the selected sequences
All sequences(76) RefSeq(17) UniProt(4)
Polymorphisms SNPs within 2kb(101 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009057 Homeodomain-like
InterPro IPR017930 Myb domain
InterPro IPR017877 Myb-like domain
InterPro IPR001005 SANT/Myb domain
Protein Ontology PR:000015319 snRNA-activating protein complex subunit 4
References (Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(31)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory