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Lcor
Gene Detail
Symbol

Name
ID
Lcor
ligand dependent nuclear receptor corepressor
MGI:2443930
Synonyms
3110023F06Rik, A630025C20Rik, mKIAA1795, Mlr2
Feature Type
protein coding gene
Genetic Map
Chromosome 19
34.94 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr19:41482645-41562246 bp, + strand
From Ensembl annotation of GRCm38

  79602 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:18153  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 chicken; 1 zebrafish

Gene Tree: Lcor

Human
homologs
Human Homolog LCOR, ligand dependent nuclear receptor corepressor
NCBI Gene ID 84458
neXtProt AC  NX_Q96JN0
Human Synonyms  MLR2
Human Chr (Location)  10q24; chr10:96832260-96964441 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(158) : Gene trapped(156) Targeted(2)
Incidental mutations (data from APF )
Interactions
Lcor interacts with 412 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (8 records)
Data Summary: Results (240)    Tissues (130)    Images (38)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 232
RT-PCR 8
cDNA source data(17)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(19) cDNA(17) Primer pair(1) Other(1)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000025019 (Evidence)
Entrez Gene212391 (Evidence)
DFCITC1584325, TC1602839, TC1718682, TC1628519
DoTSDT.101361151, DT.55160968, DT.524571, DT.101724315, DT.55190112, DT.99855695
NIA Mouse Gene IndexU043727, U088219, U059342
Consensus CDS ProjectCCDS29810.1
International Mouse Knockout Project StatusLcor
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025019 Ensembl Gene Model | MGI Sequence Detail 79602 C57BL/6J ±  kb
transcript ENSMUST00000067795 Ensembl | MGI Sequence Detail 4810 Not Applicable 
polypeptide ENSMUSP00000067603 Ensembl | MGI Sequence Detail 433 Not Applicable 

For the selected sequences
All sequences(47) RefSeq(8) UniProt(3)
Polymorphisms
SNPs within 2kb(285 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007889 DNA binding HTH domain, Psq-type
InterPro IPR009057 Homeodomain-like
Protein Ontology PR:000009730 ligand-dependent corepressor
References
(Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(43)
Other
accession IDs
MGI:1920403

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/11/2014
MGI 5.20
The Jackson Laboratory