B230317F23Rik Gene Detail

Summary

• Symbol
  B230317F23Rik
• Name
  RIKEN cDNA B230317F23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443920
  NCBI Gene: 320383
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:61431762-61438942 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 30.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  287 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443920	lncRNA gene	Chr8:61431762-61438942 (+)
129S1/SvImJ	ENSMUSG00200007688	lncRNA gene	Chr8:56244379-56246850 (+)
A/J	ENSMUSG00195012259	lncRNA gene	Chr8:56604293-56606764 (+)
AKR/J	ENSMUSG00220005752	lncRNA gene	Chr8:56425521-56427992 (+)
BALB/cJ	ENSMUSG00180014198	lncRNA gene	Chr8:56223984-56226455 (+)
C3H/HeJ	ENSMUSG00175008091	lncRNA gene	Chr8:56428477-56430948 (+)
C57BL/6NJ	ENSMUSG00215008284	lncRNA gene	Chr8:56256159-56258630 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006752	lncRNA gene	Chr8:56117005-56119487 (+)
CBA/J	ENSMUSG00210009568	lncRNA gene	Chr8:56330300-56332771 (+)
DBA/2J	ENSMUSG00185022724	lncRNA gene	Chr8:62383256-62385727 (+)
FVB/NJ	ENSMUSG00205011657	lncRNA gene	Chr8:55651927-55654398 (+)
JF1/MsJ	ENSUMUG00000013756	lncRNA gene	Chr8:64696110-64698555 (+)
LP/J	ENSMUSG00230007017	lncRNA gene	Chr8:66041883-66044354 (+)
NOD/ShiLtJ	ENSMUSG00190010133	lncRNA gene	Chr8:56209628-56212099 (+)
NZO/HlLtJ	ENSMUSG00225031231	lncRNA gene	Chr8:69477960-69480431 (+)
PWK/PhJ	ENSLUMG00010013780	lncRNA gene	Chr8:56117693-56120138 (+)
SPRET/EiJ	ENSMSPG00010015280	lncRNA gene	Chr8:57305254-57307726 (+)
WSB/EiJ	ENSIUOG00005017548	lncRNA gene	Chr8:57136180-57138651 (+)

Homology

• Gene Tree
  B230317F23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving B230317F23Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• UniProt
  2

• Ensembl
  ENSMUSG00000045746 (Evidence)
• NCBI Gene
  320383

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045746	Ensembl Gene Model | MGI Sequence Detail	7181	C57BL/6J
transcript	ENSMUST00000052189	Ensembl | MGI Sequence Detail	3354	Not Applicable
polypeptide	Q8BWT2	UniProt | EBI | MGI Sequence Detail	127	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582