6720489N17Rik Gene Detail

Summary

• Symbol
  6720489N17Rik
• Name
  RIKEN cDNA 6720489N17 gene

• Feature Type
  protein coding gene
• IDs
  MGI:2443901
  NCBI Gene: 211378
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:62603013-62624182 bp, - strand
• From Ensembl annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 32.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  60 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443901	protein coding gene	Chr13:62598066-62638257 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0020616	protein coding gene	Chr13:60608294-60610605 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0021050	protein coding gene	Chr13:64514357-64597773 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0020496	protein coding gene	Chr13:59040437-59042731 (+)
FVB/NJ	MGP_FVBNJ_G0020474	protein coding gene	Chr13:59190663-59193030 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0020504	protein coding gene	Chr13:65991274-65993839 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0019681	protein coding gene	Chr13:59844896-59849000 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  6720489N17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  3
• Genomic Mutations
  1 involving 6720489N17Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  13 strains or lines available

Gene Ontology
(GO)
Classifications

• External Resources
  FuncBase

Expression

• cDNA Data
  7

• Other Mouse Links
  GEO
  Expression Atlas

Interactions

• 6720489N17Rik interacts with 52 markers (Mir22, Mir23a, Mir23b, ...) View All

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  11
• UniProt
  4
• CCDS
  CCDS79202.1
• UniGene
  247448

• Ensembl
  ENSMUSG00000072066 (Evidence)
• NCBI Gene
  211378

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072066	Ensembl Gene Model | MGI Sequence Detail	21170	C57BL/6J
transcript	ENSMUST00000223338	Ensembl | MGI Sequence Detail	1457	Not Applicable
polypeptide	ENSMUSP00000152670	Ensembl | MGI Sequence Detail	127	Not Applicable

Protein
Information

• UniProt
  4 Sequences
• InterPro Domains
  IPR036051 KRAB domain superfamily
  IPR001909 Krueppel-associated box
  IPR039938 Zinc finger protein 781

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 3

References

• Summaries
  All 20

  Phenotypes 6
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 6720489N17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122957	Chr13:62760686-62760715 (-)	-136,519 bp
Tssr122955	Chr13:62624135-62624182 (-)	23 bp