Ccdc40
Gene Detail

Symbol Name ID

Ccdc40 coiled-coil domain containing 40 MGI:2443893

Synonyms

B930008I02Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 11

83.35 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

Chr11:119228572-119265236 bp, + strand From VEGA annotation of GRCm38   36665 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:27890  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Ccdc40

Human homologs

Human Homolog		CCDC40, coiled-coil domain containing 40
NCBI Gene ID		55036
neXtProt AC		NX_Q4G0X9
Human Synonyms		CILD15
Human Chr (Location)		17q25.3; chr17:78010431-78074412 (+)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human CCDC40

Alleles and phenotypes

All alleles(5) : Targeted(3) Gene trapped(1) Chemically induced(1)
 

Mice homozygous for an ENU-induced allele exhibit heterotaxia, hydrocephalus, short embryonic cilia, and postnatal lethality.

 

Gene Ontology (GO) classifications

All GO classifications: (16 annotations)

Process	axonemal dynein complex assembly, ciliary cell motility, ...
Component	cell projection, cilium, ...
Function	molecular_function

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (61)    Tissues (6)    Images (21)
Theiler Stages: 23

Assay Type	Results
RNA in situ	61

cDNA source data(24)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(24) cDNA(24)
Microarray probesets(2)

Other database links

VEGA Gene Model	OTTMUSG00000004002 (Evidence)
Ensembl Gene Model	ENSMUSG00000039963 (Evidence)
Entrez Gene	207607 (Evidence)
UniGene	189885
DFCI	TC1584217, TC1592576, TC1596720
DoTS	DT.101138317, DT.101310980, DT.101370898, DT.110524877, DT.40164895, DT.55164938
NIA Mouse Gene Index	U013629
Consensus CDS Project	CCDS25712.1
International Mouse Knockout Project Status	Ccdc40

Sequences

Length	Strain/Species
genomic	OTTMUSG00000004002	VEGA Gene Model | MGI Sequence Detail	36665	C57BL/6J
transcript	OTTMUST00000008889	VEGA | MGI Sequence Detail	4979	Not Applicable
polypeptide	OTTMUSP00000004338	VEGA | MGI Sequence Detail	1192	Not Applicable

All sequences(47) RefSeq(2) UniProt(2)

Polymorphisms

SNPs(75 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR013956	E3 ubiquitin ligase, BRE1
Protein Ontology	PR:000031780	coiled-coil domain-containing protein 40

References

(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(27)