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Ccdc40
Gene Detail
 Symbol
Name
ID
Ccdc40
coiled-coil domain containing 40
MGI:2443893
Synonyms B930008I02Rik
Feature Type protein coding gene
Genetic Map
Chromosome 11
83.35 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr11:119228572-119265236 bp, + strand
From VEGA annotation of GRCm38

  36665 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:27890  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Ccdc40

Human
homologs
Human Homolog CCDC40, coiled-coil domain containing 40
NCBI Gene ID 55036
neXtProt AC  NX_Q4G0X9
Human Synonyms  CILD15, FAP172
Human Chr (Location)  17q25.3; chr17:80036632-80100613 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human CCDC40
Alleles
and
phenotypes
All alleles(5) : Chemically induced (ENU)(1) Gene trapped(1) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for an ENU-induced allele exhibit heterotaxia, hydrocephalus, short embryonic cilia, and postnatal lethality.
 
Gene Ontology
(GO)
classifications
All GO classifications: (16 annotations)
Process axonemal dynein complex assembly, cilium movement, ...
Component cell projection, cilium, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (61)    Tissues (6)    Images (21)
Theiler Stages: 23
Assay TypeResults
RNA in situ 61
cDNA source data(24)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(24) cDNA(24)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000004002 (Evidence)
Ensembl Gene ModelENSMUSG00000039963 (Evidence)
Entrez Gene207607 (Evidence)
UniGene189885
DFCITC1584217, TC1592576, TC1596720
DoTSDT.101138317, DT.101310980, DT.101370898, DT.110524877, DT.40164895, DT.55164938
NIA Mouse Gene IndexU013629
Consensus CDS ProjectCCDS25712.1
International Mouse Knockout Project StatusCcdc40
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000004002 VEGA Gene Model | MGI Sequence Detail 36665 C57BL/6J ±  kb
transcript OTTMUST00000008889 VEGA | MGI Sequence Detail 4979 Not Applicable 
polypeptide OTTMUSP00000004338 VEGA | MGI Sequence Detail 1192 Not Applicable 

For the selected sequences
All sequences(56) RefSeq(11) UniProt(2)
Polymorphisms SNPs within 2kb(108 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013956 E3 ubiquitin ligase, BRE1
Protein Ontology PR:000031780 coiled-coil domain-containing protein 40
References (Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(27)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory