D030045P18Rik Gene Detail

Summary

• Symbol
  D030045P18Rik
• Name
  RIKEN cDNA D030045P18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443891
  NCBI Gene: 320363
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:45683800-45728114 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1165 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443891	lncRNA gene	Chr10:45683658-45728379 (+)
129S1/SvImJ	ENSMUSG00200007857	lncRNA gene	Chr10:42581990-42630969 (+)
A/J	ENSMUSG00195003042	lncRNA gene	Chr10:42851897-42896623 (+)
AKR/J	ENSMUSG00220006384	lncRNA gene	Chr10:42544966-42591131 (+)
BALB/cJ	ENSMUSG00180012421	lncRNA gene	Chr10:42941070-42985793 (+)
C3H/HeJ	ENSMUSG00175010667	lncRNA gene	Chr10:42733141-42777866 (+)
C57BL/6NJ	ENSMUSG00215002319	lncRNA gene	Chr10:42478596-42523322 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008841	lncRNA gene	Chr10:42882519-42929459 (+)
CBA/J	ENSMUSG00210008320	lncRNA gene	Chr10:42633378-42678109 (+)
DBA/2J	ENSMUSG00185003228	lncRNA gene	Chr10:42775691-42820409 (+)
FVB/NJ	ENSMUSG00205005080	lncRNA gene	Chr10:42691349-42736066 (+)
JF1/MsJ	ENSUMUG00000030397	lncRNA gene	Chr10:42596643-42637162 (+)
LP/J	ENSMUSG00230006150	lncRNA gene	Chr10:44579925-44624638 (+)
NOD/ShiLtJ	ENSMUSG00190005876	lncRNA gene	Chr10:42911715-42962536 (+)
NZO/HlLtJ	ENSMUSG00225019343	lncRNA gene	Chr10:48865413-48910129 (+)
PWK/PhJ	ENSLUMG00010004961	lncRNA gene	Chr10:42682835-42723349 (+)
SPRET/EiJ	ENSMSPG00010013198	lncRNA gene	Chr10:43730352-43774656 (+)
WSB/EiJ	ENSIUOG00005014907	lncRNA gene	Chr10:42452587-42490833 (+)

Homology

• Gene Tree
  D030045P18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving D030045P18Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000110874 (Evidence)
• NCBI Gene
  320363

Representative Sequences			Length	Strain/Species
genomic	320363	NCBI Gene Model | MGI Sequence Detail	44315	C57BL/6J
transcript	NR_040624	RefSeq | MGI Sequence Detail	1892	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for D030045P18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93200	Chr10:45683629-45683636 (+)	-167 bp
Tssr93201	Chr10:45683654-45683665 (+)	-140 bp
Tssr93202	Chr10:45683855-45683874 (+)	65 bp
Tssr93203	Chr10:45683875-45683897 (+)	86 bp