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Snx30 Gene Detail
Summary
  • Symbol
    Snx30
  • Name
    sorting nexin family member 30
  • Synonyms
    4732481H14Rik, C030041J06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443882
    NCBI Gene: 209131
Location & Maps
more
  • Sequence Map
    Chr4:59805840-59904737 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      98898 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 32.81 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    SNX30, sorting nexin family member 30
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNX30, sorting nexin family member 30
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ATG24A
  • Links
    NCBI Gene ID: 401548
    neXtProt AC: NX_Q5VWJ9

  • Chr Location
    9q32; chr9:112749725-112875851 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 2811
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SNX30
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
  • All Mutations and Alleles
    19
  • Gene trapped
    19
  • Incidental Mutations
    APF , CvDC
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000007408 VEGA Gene Model | MGI Sequence Detail 98898 C57BL/6J ±  kb
transcript OTTMUST00000017138 VEGA | MGI Sequence Detail 7314 Not Applicable  
polypeptide OTTMUSP00000007915 VEGA | MGI Sequence Detail 437 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    621 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 6
Other
Accession IDs
less
MGI:3026918
References
more
  • Summaries
    All 27
    Developmental Gene Expression 3
    Gene Ontology 3
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:193822 Lumayag S, et al., Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration. Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):E507-16

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/22/2016
MGI 6.06
The Jackson Laboratory