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Snx30 Gene Detail
Summary
  • Symbol
    Snx30
  • Name
    sorting nexin family member 30
  • Synonyms
    4732481H14Rik, C030041J06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443882
    NCBI Gene: 209131
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:59805840-59904737 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 32.81 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    621 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443882
protein coding gene Chr4:59805126-59904740 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028340
protein coding gene Chr4:58730681-58835046 (+)
A/J MGP_AJ_G0028301
protein coding gene Chr4:56467859-56566942 (+)
AKR/J MGP_AKRJ_G0028250
protein coding gene Chr4:58048868-58152965 (+)
BALB/cJ MGP_BALBcJ_G0028320
protein coding gene Chr4:56648016-56748546 (+)
C3H/HeJ MGP_C3HHeJ_G0028041
protein coding gene Chr4:58581165-58686035 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028761
protein coding gene Chr4:60770479-60873833 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026067
protein coding gene Chr4:53208004-53307363 (+)
CAST/EiJ MGP_CASTEiJ_G0027479
protein coding gene Chr4:58323519-58430637 (+)
CBA/J MGP_CBAJ_G0028006
protein coding gene Chr4:62834526-62947590 (+)
DBA/2J MGP_DBA2J_G0028156
protein coding gene Chr4:56365886-56465286 (+)
FVB/NJ MGP_FVBNJ_G0028123
protein coding gene Chr4:55575699-55675019 (+)
LP/J MGP_LPJ_G0028255
protein coding gene Chr4:58826546-58948450 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028147
protein coding gene Chr4:65962032-66066913 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028797
protein coding gene Chr4:58232208-58336579 (+)
PWK/PhJ MGP_PWKPhJ_G0027204
protein coding gene Chr4:56415282-56516809 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027032
protein coding gene Chr4:57557361-57662627 (+)
WSB/EiJ MGP_WSBEiJ_G0027557
protein coding gene Chr4:58224975-58332414 (+)



Homology
more
  • Human Ortholog
    SNX30, sorting nexin family member 30
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNX30, sorting nexin family member 30
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ATG24A
  • Links
    NCBI Gene ID: 401548
    neXtProt AC: NX_Q5VWJ9
    UniProt: Q5VWJ9

  • Chr Location
    9q32; chr9:112750817-112875847 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 2811
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SNX30
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028385 Ensembl Gene Model | MGI Sequence Detail 98898 C57BL/6J ±  kb
transcript ENSMUST00000030080 Ensembl | MGI Sequence Detail 7314 Not Applicable  
polypeptide ENSMUSP00000030080 Ensembl | MGI Sequence Detail 437 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 6
Other
Accession IDs
less
MGI:3026918
References
more
  • Summaries
    All 26
    Developmental Gene Expression 3
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:193822 Lumayag S, et al., Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration. Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):E507-16

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory