Rnf150 Gene Detail

Summary

• Symbol
  Rnf150
• Name
  ring finger protein 150
• Synonyms
  A630007N06Rik, C030044C12Rik, Greul5

• Feature Type
  protein coding gene
• IDs
  MGI:2443860
  NCBI Gene: 330812

Location & Maps

• Sequence Map
  Chr8:82863356-83091268 bp, + strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    227913 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 39.59 cM
• Mapping Data
  1 experiment

Homology

• Human Ortholog
  RNF150, ring finger protein 150

• Vertebrate Orthologs
  10

• Human Ortholog
  RNF150, ring finger protein 150
  Orthology source: HomoloGene, HGNC
• Links
  HGNC:23138

  NCBI Gene ID: 57484

  neXtProt AC: NX_Q9ULK6

  
  
• Chr Location
  4q31.21; chr4:140859807-141212869 (-)  GRCh38.p2

---

• HomoloGene
  Vertebrate Homology Class 33783
  1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  
• HCOP
  human homology predictions: RNF150
• Gene Tree
  Rnf150
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  27 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rnf150
• Incidental Mutations
  Mutagenetix , APF

Gene Ontology
(GO)
Classifications

• All GO Annotations
  4
• GO References
  2

• External Resources
  FuncBase

Expression

• Assay Results
  35
• Tissues
  8
• cDNA Data
  22
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
• Other Vertebrate Links
  Xenbase rnf150

Interactions

• Rnf150 interacts with 511 markers (Mir1a-1, Mir1a-2, Mir1b, ...) View All

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  6
• UniProt
  2
• CCDS
  CCDS40402.1
• UniGene
  491438

• VEGA
  OTTMUSG00000061392 (Evidence)
• Ensembl
  ENSMUSG00000047747 (Evidence)
• NCBI Gene
  330812

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000061392	VEGA Gene Model | MGI Sequence Detail	227913	C57BL/6J
transcript	OTTMUST00000149799	VEGA | MGI Sequence Detail	9682	Not Applicable
polypeptide	OTTMUSP00000077680	VEGA | MGI Sequence Detail	437	Not Applicable

Polymorphisms

• SNPs within 2kb
  2781 from dbSNP Build 142

Protein
Information

• UniProt
  2 Sequences
• Protein Ontology
  PR:000014093 RING finger protein 150
• InterPro Domains
  IPR003137 PA domain
  IPR013083 Zinc finger, RING/FYVE/PHD-type
  IPR001841 Zinc finger, RING-type

Molecular
Reagents

• All nucleic 23

  cDNA 22

  Other 1

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:1924733

References

• Summaries
  All 21

  Developmental Gene Expression 1

  Gene Ontology 2

  Phenotypes 27
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582