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Tnrc6b Gene Detail
Summary
  • Symbol
    Tnrc6b
  • Name
    trinucleotide repeat containing 6b
  • Synonyms
    2700090M07Rik, A730065C02Rik, D230019K20Rik, mKIAA1093
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443730
    NCBI Gene: 213988
  • Gene Overview
    MyGene.info: TNRC6B
Location & Maps
more
  • Sequence Map
    Chr15:80711319-80941086 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      229768 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 37.91 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    TNRC6B, trinucleotide repeat containing 6B
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TNRC6B, trinucleotide repeat containing 6B
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 23112
    neXtProt AC: NX_Q9UPQ9

  • Chr Location
    22q13.1; chr22:40044817-40335808 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 66194
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TNRC6B
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    32 phenotype references
  • All Mutations and Alleles
    142
  • Chemically induced (other)
    1
  • Gene trapped
    135
  • Radiation induced
    2
  • Targeted
    4
  • Genomic Mutations
    3 involving Tnrc6b
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000047888 Ensembl Gene Model | MGI Sequence Detail 229768 C57BL/6J ±  kb
transcript ENSMUST00000067689 Ensembl | MGI Sequence Detail 17327 Not Applicable  
polypeptide ENSMUSP00000064336 Ensembl | MGI Sequence Detail 1810 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    729 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 18
    cDNA 18

    Microarray probesets 4
Other
Accession IDs
less
MGI:1919875, MGI:2146082, MGI:2442182
References
more
  • Summaries
    All 37
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 3
    Phenotypes 32
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
  • Latest
    J:198500 Nakahara M, et al., Gene-trap mutagenesis using Mol/MSM-1 embryonic stem cells from MSM/Ms mice. Mamm Genome. 2013 Jun;24(5-6):228-39

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory