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Fam19a1
Gene Detail
 Symbol
Name
ID
Fam19a1
family with sequence similarity 19, member A1
MGI:2443695
Synonyms C630007B19Rik, Tafa-1
Feature Type protein coding gene
Genetic Map
Chromosome 6
44.67 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr6:96113154-96657198 bp, + strand
From VEGA annotation of GRCm38

  544045 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:45655  Vertebrate Homology Class
1 human; 1 mouse; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Fam19a1

Human
homologs
Human Homolog FAM19A1, family with sequence similarity 19 (chemokine (C-C motif)-like), member A1
NCBI Gene ID 407738
neXtProt AC  NX_Q7Z5A9
Human Synonyms  TAFA1, TAFA-1
Human Chr (Location)  3p14.1; chr3:67991592-68545621 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Gene trapped(1) Targeted(1)
Interactions
Fam19a1 interacts with 337 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component endoplasmic reticulum, extracellular region
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(4)
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(4) cDNA(4)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000029712 (Evidence)
Ensembl Gene ModelENSMUSG00000059187 (Evidence)
Entrez Gene320265 (Evidence)
UniGene489890
DFCITC1585490, TC1635310
DoTSDT.91282217, DT.91592608
NIA Mouse Gene IndexU007210
Consensus CDS ProjectCCDS39574.1
International Mouse Knockout Project StatusFam19a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029712 VEGA Gene Model | MGI Sequence Detail 544045 C57BL/6J ±  kb
transcript OTTMUST00000073716 VEGA | MGI Sequence Detail 3252 Not Applicable 
polypeptide OTTMUSP00000038205 VEGA | MGI Sequence Detail 133 Not Applicable 

For the selected sequences
All sequences(33) RefSeq(6) UniProt(1)
Polymorphisms SNPs within 2kb(2550 from dbSNP Build 137)    SNPs within 2kb including multiple locations(2552)
Protein-related
information
ResourceIDDescription
InterPro IPR020350 Chemokine-like protein, FAM19A2
Protein Ontology PR:000030989 protein FAM19A1
References (Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:90490 Tom Tang Y, et al., TAFA: a novel secreted family with conserved cysteine residues and restricted expression in the brain. Genomics. 2004 Apr;83(4):727-34
All references(26)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory