A230077H06Rik Gene Detail

Summary

• Symbol
  A230077H06Rik
• Name
  RIKEN cDNA A230077H06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443592
  NCBI Gene: 320210
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:40498577-40547748 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 27.86 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1650 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443592	lncRNA gene	Chr7:40467900-40550468 (-)
129S1/SvImJ	ENSMUSG00200025656	lncRNA gene	Chr7:28273104-28355556 (-)
A/J	ENSMUSG00195048626	lncRNA gene	Chr7:31984795-32078449 (-)
AKR/J	ENSMUSG00220032857	lncRNA gene	Chr7:19162452-19244915 (-)
BALB/cJ	ENSMUSG00180022826	lncRNA gene	Chr7:29575075-29668723 (-)
C3H/HeJ	ENSMUSG00175040353	lncRNA gene	Chr7:29765541-29847993 (-)
C57BL/6NJ	ENSMUSG00215022929	lncRNA gene	Chr7:28733187-28815642 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004019	antisense lncRNA gene	Chr7:40032433-40120378 (-)
CAST/EiJ	ENSTCUG00005049545	lncRNA gene	Chr7:31678043-31762701 (-)
CBA/J	ENSMUSG00210028586	lncRNA gene	Chr7:29784626-29867084 (-)
DBA/2J	ENSMUSG00185050681	lncRNA gene	Chr7:33120749-33211750 (-)
FVB/NJ	ENSMUSG00205022187	lncRNA gene	Chr7:29877701-29971363 (-)
JF1/MsJ	ENSUMUG00000032208	lncRNA gene	Chr7:37596542-37687572 (-)
LP/J	ENSMUSG00230014969	lncRNA gene	Chr7:38843314-38937002 (-)
NOD/ShiLtJ	ENSMUSG00190009238	lncRNA gene	Chr7:29872558-29966215 (-)
NZO/HlLtJ	ENSMUSG00225009358	lncRNA gene	Chr7:37157585-37240081 (-)
PWK/PhJ	ENSLUMG00010022777	lncRNA gene	Chr7:28623954-28708794 (-)
SPRET/EiJ	ENSMSPG00010006198	lncRNA gene	Chr7:28637648-28726464 (-)
WSB/EiJ	ENSIUOG00005009495	lncRNA gene	Chr7:29499891-29593558 (-)

Homology

• Gene Tree
  A230077H06Rik
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1

• Ensembl
  ENSMUSG00000100600 (Evidence)
• NCBI Gene
  320210

Representative Sequences			Length	Strain/Species
genomic	320210	NCBI Gene Model | MGI Sequence Detail	49172	C57BL/6J
transcript	NR_040329	RefSeq | MGI Sequence Detail	2935	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A230077H06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72111	Chr7:40548028-40548043 (-)	-288 bp