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Fam78a Gene Detail
Summary
  • Symbol
    Fam78a
  • Name
    family with sequence similarity 78, member A
  • Synonyms
    A130092J06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443569
    NCBI Gene: 241303
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:32050055-32084857 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 22.00 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    72 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443569
protein coding gene Chr2:32050055-32087436 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025595
protein coding gene Chr2:30454405-30496543 (-)
A/J MGP_AJ_G0025573
protein coding gene Chr2:29186416-29222918 (-)
AKR/J MGP_AKRJ_G0025542
protein coding gene Chr2:30192165-30236029 (-)
BALB/cJ MGP_BALBcJ_G0025569
protein coding gene Chr2:29310393-29346014 (-)
C3H/HeJ MGP_C3HHeJ_G0025330
protein coding gene Chr2:30108666-30146345 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026014
protein coding gene Chr2:31406546-31443628 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023422
protein coding gene Chr2:27927676-27962747 (-)
CAST/EiJ MGP_CASTEiJ_G0024792
protein coding gene Chr2:30045124-30082263 (-)
CBA/J MGP_CBAJ_G0025307
protein coding gene Chr2:32566304-32616405 (-)
DBA/2J MGP_DBA2J_G0025440
protein coding gene Chr2:28957270-28995229 (-)
FVB/NJ MGP_FVBNJ_G0025403
protein coding gene Chr2:28816805-28852890 (-)
LP/J MGP_LPJ_G0025526
protein coding gene Chr2:30339898-30382418 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025433
protein coding gene Chr2:32258821-32297676 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026072
protein coding gene Chr2:30106993-30143113 (-)
PWK/PhJ MGP_PWKPhJ_G0024539
protein coding gene Chr2:28851612-28892603 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024339
protein coding gene Chr2:30250349-30287760 (-)
WSB/EiJ MGP_WSBEiJ_G0024860
protein coding gene Chr2:30281466-30318194 (-)



Homology
more
  • Human Ortholog
    FAM78A, family with sequence similarity 78 member A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    FAM78A, family with sequence similarity 78 member A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C9orf59
  • Links
    NCBI Gene ID: 286336
    neXtProt AC: NX_Q5JUQ0
    UniProt: Q5JUQ0

  • Chr Location
    9q34.13; chr9:131258078-131281930 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 14115
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: FAM78A
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000050592 Ensembl Gene Model | MGI Sequence Detail 34803 C57BL/6J ±  kb
transcript ENSMUST00000139629 Ensembl | MGI Sequence Detail 3236 Not Applicable  
polypeptide ENSMUSP00000115010 Ensembl | MGI Sequence Detail 283 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Developmental Gene Expression 1
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/16/2019
MGI 6.14
The Jackson Laboratory