About   Help   FAQ
Mfsd9 Gene Detail
Summary
  • Symbol
    Mfsd9
  • Name
    major facilitator superfamily domain containing 9
  • Synonyms
    4931419K03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443548
    NCBI Gene: 211798
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:40772040-40790657 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 19.91 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    237 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443548
protein coding gene Chr1:40772038-40790687 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015972
protein coding gene Chr1:39586579-39607544 (-)
A/J MGP_AJ_G0015956
protein coding gene Chr1:38460480-38480649 (-)
AKR/J MGP_AKRJ_G0015911
protein coding gene Chr1:38929675-38952411 (-)
BALB/cJ MGP_BALBcJ_G0015910
protein coding gene Chr1:38115931-38134341 (-)
C3H/HeJ MGP_C3HHeJ_G0015743
protein coding gene Chr1:39254581-39274366 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016363
protein coding gene Chr1:41246218-41267766 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014085
protein coding gene Chr1:35373025-35391735 (-)
CAST/EiJ MGP_CASTEiJ_G0015324
protein coding gene Chr1:39143992-39165038 (-)
CBA/J MGP_CBAJ_G0015715
protein coding gene Chr1:42445143-42469046 (-)
DBA/2J MGP_DBA2J_G0015816
protein coding gene Chr1:37743578-37762602 (-)
FVB/NJ MGP_FVBNJ_G0015818
protein coding gene Chr1:37281557-37300295 (-)
LP/J MGP_LPJ_G0015886
protein coding gene Chr1:39934715-39954240 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015838
protein coding gene Chr1:44423792-44443612 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016410
protein coding gene Chr1:39102090-39121507 (-)
PWK/PhJ MGP_PWKPhJ_G0015107
protein coding gene Chr1:37559174-37577820 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014889
protein coding gene Chr1:39072519-39092087 (-)
WSB/EiJ MGP_WSBEiJ_G0015386
protein coding gene Chr1:39077494-39097389 (-)



Homology
more
  • Human Ortholog
    MFSD9, major facilitator superfamily domain containing 9
  • Vertebrate Orthologs
    10
  • Human Ortholog
    MFSD9, major facilitator superfamily domain containing 9
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 84804
    neXtProt AC: NX_Q8NBP5
    UniProt: Q8NBP5

  • Chr Location
    2q12.1; chr2:102713867-102736888 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 13100
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: MFSD9
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 211798 NCBI Gene Model | MGI Sequence Detail 18618 C57BL/6J ±  kb
transcript NM_172499 RefSeq | MGI Sequence Detail 3152 C57BL/6  
polypeptide Q8C0T7 UniProt | EBI | MGI Sequence Detail 466 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000030408 major facilitator superfamily domain-containing protein 9
  • InterPro Domains
    IPR011701 Major facilitator superfamily
    IPR020846 Major facilitator superfamily domain
    IPR036259 MFS transporter superfamily
    IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 3
References
more
  • Summaries
    All 21
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
03/24/2020
MGI 6.15
The Jackson Laboratory