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Ccdc28a Gene Detail
Summary
  • Symbol
    Ccdc28a
  • Name
    coiled-coil domain containing 28A
  • Synonyms
    1700009P13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443508
    NCBI Gene: 215814
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:18213676-18234998 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 7.53 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    289 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443508
protein coding gene Chr10:18213676-18235805 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017037
protein coding gene Chr10:15883209-15906665 (-)
A/J MGP_AJ_G0017015
protein coding gene Chr10:15282399-15302286 (-)
AKR/J MGP_AKRJ_G0016979
protein coding gene Chr10:15519597-15541506 (-)
BALB/cJ MGP_BALBcJ_G0016973
protein coding gene Chr10:15347323-15366251 (-)
C3H/HeJ MGP_C3HHeJ_G0016798
protein coding gene Chr10:15863167-15884241 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017435
protein coding gene Chr10:16272502-16292847 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015140
protein coding gene Chr10:14175694-14194142 (-)
CAST/EiJ MGP_CASTEiJ_G0016380
protein coding gene Chr10:15655738-15676703 (-)
CBA/J MGP_CBAJ_G0016770
protein coding gene Chr10:17002240-17024255 (-)
DBA/2J MGP_DBA2J_G0016878
protein coding gene Chr10:15172755-15192543 (-)
FVB/NJ MGP_FVBNJ_G0016873
protein coding gene Chr10:14934588-14955281 (-)
LP/J MGP_LPJ_G0016953
protein coding gene Chr10:15709458-15729313 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016903
protein coding gene Chr10:17350856-17374763 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017473
protein coding gene Chr10:15490257-15513357 (-)
PWK/PhJ MGP_PWKPhJ_G0016165
protein coding gene Chr10:14990961-15009960 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015948
protein coding gene Chr10:15652643-15672201 (-)
WSB/EiJ MGP_WSBEiJ_G0016442
protein coding gene Chr10:15577972-15598487 (-)



Homology
more
  • Human Ortholog
    CCDC28A, coiled-coil domain containing 28A
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CCDC28A, coiled-coil domain containing 28A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C6orf80, CCRL1AP
  • Links
    NCBI Gene ID: 25901
    neXtProt AC: NX_Q8IWP9
    UniProt: Q8IWP9

  • Chr Location
    6q24.1; chr6:138773517-138793319 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000059554 Ensembl Gene Model | MGI Sequence Detail 21323 C57BL/6J ±  kb
    transcript ENSMUST00000052648 Ensembl | MGI Sequence Detail 2255 Not Applicable  
    polypeptide ENSMUSP00000050107 Ensembl | MGI Sequence Detail 192 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      6 Sequences
    • InterPro Domains
      IPR025271 Coiled-coil domain-containing protein 28
    Molecular
    Reagents
    less
    • All nucleic 77
      cDNA 77

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGI:2143626
    References
    more
    • Summaries
      All 31
      Developmental Gene Expression 2
      Phenotypes 11
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    08/04/2020
    MGI 6.15
    The Jackson Laboratory