4930412C18Rik Gene Detail

Summary

• Symbol
  4930412C18Rik
• Name
  RIKEN cDNA 4930412C18 gene
• Synonyms
  5730591J02Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:2443490
  NCBI Gene: 320152
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:9770585-9823411 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 4.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  405 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443490	lncRNA gene	Chr4:9770585-9823414 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015532	unclassified non-coding RNA gene	Chr4:6399408-6454075 (+)
A/J	MGP_AJ_G0015509	unclassified non-coding RNA gene	Chr4:6234941-6287731 (+)
AKR/J	MGP_AKRJ_G0015473	unclassified non-coding RNA gene	Chr4:6319117-6371413 (+)
BALB/cJ	MGP_BALBcJ_G0015471	unclassified non-coding RNA gene	Chr4:6220458-6273645 (+)
C3H/HeJ	MGP_C3HHeJ_G0015294	unclassified non-coding RNA gene	Chr4:6501190-6555060 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015925	unclassified non-coding RNA gene	Chr4:6734556-6788614 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013660	unclassified non-coding RNA gene	Chr4:5903827-5958128 (+)
CAST/EiJ	MGP_CASTEiJ_G0014848	unclassified non-coding RNA gene	Chr4:6348687-6398076 (+)
CBA/J	MGP_CBAJ_G0015275	unclassified non-coding RNA gene	Chr4:6843559-6904593 (+)
DBA/2J	MGP_DBA2J_G0015369	unclassified non-coding RNA gene	Chr4:6201710-6255436 (+)
FVB/NJ	MGP_FVBNJ_G0015376	unclassified non-coding RNA gene	Chr4:6073604-6125635 (+)
LP/J	MGP_LPJ_G0015448	unclassified non-coding RNA gene	Chr4:6414904-6474760 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015400	unclassified non-coding RNA gene	Chr4:7036676-7091743 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015966	unclassified non-coding RNA gene	Chr4:6322838-6373213 (+)
PWK/PhJ	MGP_PWKPhJ_G0014634	unclassified non-coding RNA gene	Chr4:6220194-6270665 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014422	unclassified non-coding RNA gene	Chr4:6287866-6343203 (+)
WSB/EiJ	MGP_WSBEiJ_G0014954	unclassified non-coding RNA gene	Chr4:6419756-6469488 (+)

Homology

• Gene Tree
  4930412C18Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1

• Ensembl
  ENSMUSG00000085558 (Evidence)
• NCBI Gene
  320152

Representative Sequences			Length	Strain/Species
genomic	320152	NCBI Gene Model | MGI Sequence Detail	52827	C57BL/6J
transcript	NR_030693	RefSeq | MGI Sequence Detail	3969	C57BL/6

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:1924831

References

• Summaries
  All 13
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4930412C18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36455	Chr4:9770625-9770689 (+)	72 bp