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Pdzd4 Gene Detail
Summary
  • Symbol
    Pdzd4
  • Name
    PDZ domain containing 4
  • Synonyms
    D130075J17Rik, Kiaa1444-hp, LU1, PDZD4, Pdzk4, PDZRN4L, Pdzrnk4l, Xlu
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443483
    NCBI Gene: 245469
  • Alliance
    genome feature page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:72836965-72868575 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 37.41 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    580 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443483
 protein coding gene ChrX:72836963-72868649 (-)
129S1/SvImJ ENSMUSG00200040857
 protein coding gene ChrX:54897350-54928993 (-)
A/J ENSMUSG00195033269
 protein coding gene ChrX:58573598-58605229 (-)
AKR/J ENSMUSG00220045658
 protein coding gene ChrX:53875892-53907532 (-)
BALB/cJ ENSMUSG00180045641
 protein coding gene ChrX:55154321-55185962 (-)
C3H/HeJ ENSMUSG00175032947
 protein coding gene ChrX:58737994-58769622 (-)
C57BL/6NJ ENSMUSG00215038278
 protein coding gene ChrX:55238155-55269780 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033162
 protein coding gene ChrX:68796214-68826756 (-)
CAST/EiJ ENSTCUG00005039694
 protein coding gene ChrX:56655953-56687847 (-)
CBA/J ENSMUSG00210035318
 protein coding gene ChrX:55418668-55450293 (-)
DBA/2J ENSMUSG00185032211
 protein coding gene ChrX:67840315-67871925 (-)
FVB/NJ ENSMUSG00205021737
 protein coding gene ChrX:54719643-54751274 (-)
JF1/MsJ ENSUMUG00000025568
 protein coding gene ChrX:88581579-88613173 (-)
LP/J ENSMUSG00230031541
 protein coding gene ChrX:74419488-74451126 (-)
NOD/ShiLtJ ENSMUSG00190037572
 protein coding gene ChrX:54658645-54690274 (-)
NZO/HlLtJ ENSMUSG00225047003
 protein coding gene ChrX:79623870-79655510 (-)
PWK/PhJ ENSLUMG00010045489
 protein coding gene ChrX:54402703-54434281 (-)
SPRET/EiJ ENSMSPG00010031096
 protein coding gene ChrX:57485615-57516545 (-)
WSB/EiJ ENSIUOG00005049150
 protein coding gene ChrX:55485781-55517445 (-)



Homology
more
  • Human Ortholog
    PDZD4, PDZ domain containing 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PDZD4, PDZ domain containing 4
  • Synonyms
    LNX5, LU1, PDZK4, PDZRN4L
  • Links
    NCBI Gene ID: 57595
    UniProt: Q76G19

  • Chr Location
    Xq28; chrX:153802166-153830930 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 images
    9 phenotype references
Male chimeras hemizygous for a gene trapped allele appear normal at E9.5.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    680
  • Tissues
    11
  • cDNA Data
    28
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000002006 Ensembl Gene Model | MGI Sequence Detail 31611 C57BL/6J ±  kb
transcript ENSMUST00000002080 Ensembl | MGI Sequence Detail 3970 Not Applicable  
polypeptide ENSMUSP00000002080 Ensembl | MGI Sequence Detail 772 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 28
    cDNA 28

    Microarray probesets 3
Other
Accession IDs
less
MGI:2159602
References
more
  • Summaries
    All 34
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory