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Pdzd4
Gene Detail
 Symbol
Name
ID
Pdzd4
PDZ domain containing 4
MGI:2443483
Synonyms D130075J17Rik, Kiaa1444-hp, LU1, PDZD4, Pdzk4, PDZRN4L, Pdzrnk4l, Xlu
Feature Type protein coding gene
Genetic Map
Chromosome X
37.41 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
ChrX:73793359-73824969 bp, - strand
From VEGA annotation of GRCm38

  31611 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:13046  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 2 zebrafish

Gene Tree: Pdzd4

Human
homologs
Human Homolog PDZD4, PDZ domain containing 4
NCBI Gene ID 57595
neXtProt AC  NX_Q76G19
Human Synonyms  LU1, PDZK4, PDZRN4L
Human Chr (Location)  Xq28; chrX:153802168-153830548 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(97) : Gene trapped(94) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Male chimeras hemizygous for a gene trapped allele appear normal at E9.5.
 
Phenotype Images(1)
Interactions
Pdzd4 interacts with 188 markers (Mir10b, Mir19a, Mir19b-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cytoplasm
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (82)    Tissues (10)    Images (23)
Theiler Stages: 23
Assay TypeResults
RNA in situ 82
cDNA source data(27)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(27) cDNA(27)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000017680 (Evidence)
Ensembl Gene ModelENSMUSG00000002006 (Evidence)
Entrez Gene245469 (Evidence)
UniGene103782
DFCITC1583629, TC1597256
DoTSDT.101353239, DT.91383377, DT.97389333
NIA Mouse Gene IndexU019947
Consensus CDS ProjectCCDS30214.1, CCDS72393.1
International Mouse Knockout Project StatusPdzd4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017680 VEGA Gene Model | MGI Sequence Detail 31611 C57BL/6J ±  kb
transcript OTTMUST00000042878 VEGA | MGI Sequence Detail 3970 Not Applicable 
polypeptide OTTMUSP00000019263 VEGA | MGI Sequence Detail 772 Not Applicable 

For the selected sequences
All sequences(41) RefSeq(14) UniProt(2)
Polymorphisms SNPs within 2kb(101 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001478 PDZ domain
Protein Ontology PR:000031478 PDZ domain-containing protein 4
References (Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(37)
Other
accession IDs
MGI:2159602

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory