About   Help   FAQ
Pdzd4 Gene Detail
Summary
  • Symbol
    Pdzd4
  • Name
    PDZ domain containing 4
  • Synonyms
    D130075J17Rik, Kiaa1444-hp, LU1, PDZD4, Pdzk4, PDZRN4L, Pdzrnk4l, Xlu
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443483
    NCBI Gene: 245469
  • Gene Overview
    MyGene.info: PDZD4
Location & Maps
more
  • Sequence Map
    ChrX:73793359-73824969 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      31611 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    PDZD4, PDZ domain containing 4
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PDZD4, PDZ domain containing 4
    Orthology source: HomoloGene
  • Synonyms
    LU1, PDZK4, PDZRN4L
  • Links
    NCBI Gene ID: 57595
    neXtProt AC: NX_Q76G19

  • Chr Location
    Xq28; chrX:153802166-153830567 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 images
    9 phenotype references
  • All Mutations and Alleles
    97
  • Gene trapped
    94
  • Targeted
    3
  • Incidental Mutations
Male chimeras hemizygous for a gene trapped allele appear normal at E9.5.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017680 VEGA Gene Model | MGI Sequence Detail 31611 C57BL/6J ±  kb
transcript OTTMUST00000042878 VEGA | MGI Sequence Detail 3970 Not Applicable  
polypeptide OTTMUSP00000019263 VEGA | MGI Sequence Detail 772 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    100 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000031478 PDZ domain-containing protein 4
  • InterPro Domains
    IPR001478 PDZ domain
Molecular
Reagents
less
  • All nucleic 27
    cDNA 27

    Microarray probesets 3
Other
Accession IDs
less
MGI:2159602
References
more
  • Summaries
    All 33
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
04/26/2016
MGI 6.03
The Jackson Laboratory