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Pdzd4
Gene Detail
Symbol

Name
ID
Pdzd4
PDZ domain containing 4
MGI:2443483
Synonyms
D130075J17Rik, Kiaa1444-hp, LU1, PDZD4, Pdzk4, PDZRN4L, Pdzrnk4l, Xlu
Feature Type
protein coding gene
Genetic Map
Chromosome X
37.41 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
ChrX:73793359-73824969 bp, - strand
From VEGA annotation of GRCm38

  31611 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:13046  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: PDZD4
Gene Tree: Pdzd4

Human
homologs
PDZD4, PDZ domain containing 4
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 57595
neXtProt AC: NX_Q76G19

Human Synonyms: LU1, PDZK4, PDZRN4L

Human Chr (Location): Xq28; chrX:153802166-153830567 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(97) : Gene trapped(94) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Male chimeras hemizygous for a gene trapped allele appear normal at E9.5.
 
Phenotype Images(1)
Interactions
Pdzd4 interacts with 187 markers (Mir10b, Mir19a, Mir19b-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process protein ubiquitination
Component cytoplasm
Function ubiquitin protein ligase activity
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (82)    Tissues (10)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 82
cDNA source data(27)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase pdzd4 ; ZFIN pdzd4    NEW 
Molecular
reagents
All nucleic(27) cDNA(27)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000017680 (Evidence)
Ensembl Gene Model ENSMUSG00000002006 (Evidence)
Entrez Gene 245469 (Evidence)
UniGene 103782
DFCI TC1583629, TC1597256
DoTS DT.101353239, DT.91383377, DT.97389333
NIA Mouse Gene Index U019947
Consensus CDS Project CCDS30214.1, CCDS72393.1
International Mouse Phenotyping Consortium Status Pdzd4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017680 VEGA Gene Model | MGI Sequence Detail 31611 C57BL/6J ±  kb
transcript OTTMUST00000042878 VEGA | MGI Sequence Detail 3970 Not Applicable 
polypeptide OTTMUSP00000019263 VEGA | MGI Sequence Detail 772 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(12) UniProt(2)
Polymorphisms
SNPs within 2kb(101 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001478 PDZ domain
Protein Ontology PR:000031478 PDZ domain-containing protein 4
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(37)
Other
accession IDs
MGI:2159602

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory